gdpd3a (gdpd3a,LOC107590565,LOC107686997,LOC107729175,LOC107755582)


Basic Information

Item Value
gene id gdpd3a
gene name gdpd3a,LOC107590565,LOC107686997,LOC107729175,LOC107755582
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19394731 ~ 19399272 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235804.1
CAGGCTGAAAAGTGAAAACTCACACCTAGAGAGCAAGCTTTCATTGTTTAGGTTTTCTCTAGTGGGGAGGCATTGATGTTAGCAGGAATGAAGGAGCGAGAGGAAGCTTTACATTGTTACCTTGCTTTGCTTTCTCATGAGGCAATATTTCTTGCGAAAGTAAGTGAAGTAAAGTGAGGGAAGAAAAGGGAGTGGCTGAGAAACTAGTGAACTAGAGCGCTGAGCGACACAAGGCAAGGGAAAAGATAAGGAAAATCATACTGACATCAGCACTGGAGACAGGTGTACAGGAGCCGTACTTGGATCTGAAACTGGATCAGATACTCCAGGACCTCTCAAATAAAAGTTGAACGGACAAATAAAAGTATTGgTTGTGTTTTTGCGTTCACCTGCTGTTTATCGGAGCCCCTTTAGTGGGAATTATGGCAAGCTACCTGTACTACCTGCTCCCAGCAGTAGGGGGCTACGCTCTCACTTCACTCTACTTTCTGAAGAACCCTCATATTCTGCACAAGAAGAAGCAGACAGCTTTCTCCTGCACCCACATCTCTCACAGGGGAGGCGGTGGTGAAAGGATTGAGAACACCATAGAGGCCTTTACACATGCGGTTGAAGAAGGCACAGAGATGCTGGAGTTAGACTGTCACTTGACTAAAGACGGTCATGTTGTTGTGTCACATGATGAGAACCTCCTGCGGCAGACTGGACAAGATGTCAACGTTTCCTCCCTAAAACTGGAGgATTTGCCACCTTATAAGGAGACGCTCGAGGTGACCtttaagacagGCCACGTCAGCACTGGGTCAGATAGAAACATTGCATTATTAGAGGACGTCTTCTGCAAATTTCCACAGACAGCTGTAAACATTGAAGTGAAAGAGAATAACAGCTTGCTCATTGAAAAGATTTCTGATCTCGTGAAGAAATACAACAGAGAGGCCACCTCAGTTTGGGCTTCTGTTGACTCTACCATCATGAAAAATTGTCTCAAAACAAATTCCTCAATGCCCTACATGTTCACTGTGAAGCGAGGTTTAAAGCTGCTCCTGCTCTACTACACTGGTCTCCTGCCATTCGTTCCCCTCGGGGAGAGTTTCCTGCAGTTCTACCTGCCACAGATCATAAACAGAGAATACATACCTGACATGTGGATCATGAGAAGCAGACTGGTCATCTTTTTAATTGAAAGGCTGACGATGAGAAAAGGGATGTTCAAGCACCTCAGAGACAGAGGAATTCAGattcatcTCTTTGTGTGTAACAACGAAGAGGATATTAATACTGCATTTGCTGTAGGAGCAACAGGAGTCATGACCGATTATCCCTCCCTGTTATCAAACTATATTAAAACGCACACACAAGACACGTGATCAAACGCAAACACACAATGTAATTAACCCTTGCCCAGTCAAAcaccacgcacacacacgctgtaCAAATGCTGTTTGCCTTTAAACACAGACAAGTTTTATATCAACGACAATATTATCTTATCTAGCATAGTGTTCACACGAAACCTATGTGGTTTATGTCATTCTTTATGGGTCAGTATGAACACGCATAATAAATACAACTCATGCCTTA

Function

symbol description
gdpd3a Predicted to enable lysophospholipase activity and phosphoric diester hydrolase activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in brain; lens; and pronephric duct. Orthologous to human GDPD3 (glycerophosphodiester phosphodiesterase domain containing 3).

NR:

description
PREDICTED: glycerophosphodiester phosphodiesterase domain-containing protein 1-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:0007420 brain development biological_process
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235804.1 True 1584 mRNA 0.44 11 19394731 19399272

Neighbor

gene id symbol gene type direction distance location
mapk3 mapk3,LOC107686994,LOC108411041,LOC107567791,LOC107690275,LOC108256206 coding upstream 1533 19385022 ~ 19393198 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding upstream 14102 19376975 ~ 19380629 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding upstream 97200 19292801 ~ 19297531 (+)
xylt1 xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755 coding upstream 132846 19203479 ~ 19261885 (+)
LOC122341328 si:dkey-202l16.5,LOC107690339,LOC107733837,LOC107685903,LOC107590608,LOC107729185 coding upstream 266083 19122323 ~ 19128648 (+)
si:ch211-11k18.4 si:ch211-11k18.4,ehd3,LOC107567764,LOC107755580,LOC107690281,LOC107590563,LOC107687000,LOC108411040 coding downstream 4290 19403562 ~ 19408684 (+)
rabep2 LOC107690284,LOC107567756,LOC107755579,LOC107729174,LOC107687001 coding downstream 10319 19409591 ~ 19417891 (+)
LOC122341749 LOC107687002 coding downstream 43948 19443220 ~ 19445897 (+)
hsd17b1 hsd17b1 coding downstream 47899 19447171 ~ 19449662 (+)
si:ch73-141c7.1 si:ch73-141c7.1,LOC107567723,LOC107590559,LOC107687003,LOC107729197,LOC107690287 coding downstream 52139 19451411 ~ 19454315 (+)
G21215 NA non-coding upstream 89673 19304852 ~ 19305058 (+)
G21151 NA non-coding upstream 107082 19258917 ~ 19287649 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding upstream 540188 18854109 ~ 18854543 (+)
G21180 NA non-coding upstream 691048 18702584 ~ 18703683 (+)
LOC122331012 NA non-coding upstream 740016 18652361 ~ 18654715 (+)
G21239 LOC107687002 non-coding downstream 38735 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 56154 19455426 ~ 19459635 (+)
G21269 aclya,LOC107687019,LOC107729187,LOC107590593,LOC107755575,LOC107567706,LOC107690323 non-coding downstream 71727 19470999 ~ 19472687 (+)
G21246 NA non-coding downstream 84229 19483501 ~ 19484384 (+)
G21275 NA non-coding downstream 90501 19489773 ~ 19490022 (+)
G21213 NA other upstream 102390 19291445 ~ 19292341 (+)
G21202 NA other upstream 401497 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 518604 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 552971 18828665 ~ 18841760 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other upstream 660966 18733165 ~ 18733765 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other downstream 136 19399408 ~ 19403176 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 664998 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 695579 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 786263 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 1482926 20882198 ~ 20956574 (+)

Expression


Co-expression Network