grin2ca (grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554)


Basic Information

Item Value
gene id grin2ca
gene name grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25106181 ~ 25162861 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235810.1
GGATTACAACTACAGTAATCTGAGAACCGCAAGTGCACTCCACAGCCACAGACGAACACATCAACTCCAGCAAAACATCAGGGGTCAGGGGAAACTGAAATGAGGCACCTGCGAACAGGACATCGCTTTACAACTACAGAAGTCAAGAAAATAATTGCAAACTCCAGGGAATCAGAAGCTAAAATATCTGTTGGCTAGCAATCAACAGCCAGCTAAAACGAGAAGCCCCGCCTGTCGGCCTGTGCCACCTGTGTGCCCTTCTAACTGCCAGTTTTTGGAGTAATCCGTAGGTTTACTGCAATGAGGACTACACTTGAAGGAACATGTTGGAAACAAGTTAACGAGGTAAACAAAACGTATTCGTCGGACTGAAAAGAACTCGGAATACACCAGAAATTCCGTTTCCTATCGTATGGAACAGCAGACAATTTAGAATCCTGTTTTACCCCAATGTTCTTTTTGACACAAAACTGCAAATGTATGTCTGATTTGGACGCAGATTTGGACCCGTCCAATGAGAATTGAGACACATGCGTCCACCTAACCAGTGACCGTCCTGGACGAGGAGCTCTATGCTCATCTGCACCAGGACACTTGTGGACAGCAGTCTCCTGCCTGTCATTTCTCCTCTGGCATCCGctctccctccatctctccaCGCCACCTCCTCTTTTCCTCCCCCCCCTCCCTCCATCCGTCCCACCCTCCCCTCGCGGAAGATGATGTGACCTTCTGCCAAACTGCTAGAGACCATGCCACTGTCACAGTGGGCTGTTCTGTCTACACTGAAATAGAATCAAACAAGAgccacgagagagagagagagagagagaaagaaggagggggggacgggggaaaaaaaagaagaagaaaaaaatcaggaCGAGTCACGGAGGAGAAAATGTGCTGTCGGGCGTCCGGGCTGGATGTGGTTTGCCAAAGCAGGCAGTAGGCGACTGAGATGGGCGTTCATCTAGGCTGTCTCAGCGACACACTGTGGCTGccgttgctgctgctgctgtctgtcCTCTGCGCCCCCCGCTGCCAGTGTCGCCCGTTCGGGATGGTTGAGCCCACCGTGAACGTGGCGGTGGTGTTCAGCGGCTCCGCCTACCAGATGGAGATCAAGGGGCGCCTGAGCCGGGAGAACTTCCTGGACCTGCCGCTGGAGGTGAACCCCATCACTGTGCTGGTGAACAACACCAACCCGCGCACCCTACTGACGCGCATCTGCGACACGCTGGCTGCTAACAGGGTGCACGGGGTGGTCTTTGAAGATAACATTGGGTCCGAGGCCGTGGCGCAGATCCTAGACTTCATCTCAACGCAGACGGCTGTGCCTATAGTGGGCATCAGCGGGGGATCAGCCGTCGTCCTGCCTCACAAGGGCGACGGCTCTACCTTCCTTCAGCTGGGCTCCTCCATCGAGCAGCAGATCAATGGGATGTTCAAGATGATGGAGGAGTACAACTGGGACAGTTTTGTGGTGGTGACCAGCATGTACCCGGGCTACGACTCTTATGTGGACTACATCCGCTCCTTCATCGACACGTCTTACTTCCTCTGGGAGCTGCAGGACATCTTGACGTTTGACATGTCGGCCGACGGCATGAACGACCTCCGAGCGCGCCGCTTACTCCAGCAGATCGACGCTCAGGTGCTGCTGGTGTACTGCTCGCACGACGAGGCCCAGTACCTCTTCAGCATGGCCAGGGAAGTGGGTTTGGTGGGTCCGGGGTATATCTGGTTCATTCCCAGCCTTGCAGTGGGAAACCCCAATATGCCTCCTCCAGACAGCTTCCCCATCGGACTGATCAGCATCATCACCGATCGCTGGAAGATGAGCTTGAGAAACAGGGTCAGGGATGGGGTGGCCATCGTGGTGAAGGGAGTGGAGAGCTTCCGCAAGCAGAGAGGCTTTGTTCCCGACGGACACATGGACTGTCAGAGTCCGGAGCGGCCGTCCACCAATGACACTCTCTACAGGTATATGCTGAACGTGTCCTGGGAGAACACTGACTTTTCCTTCAACAGTGATGGATATCTGGTCAACCCTTCCATGATCATAATCACTCTGGACCGCGGGAGACAGTGGGATAAGGTGGGGAATTACGAGTCTGGTATCCTGCAGATGAGGTATCCCGTGTGGCCACGTTATGGGACCTTCCTGGAGCACGTGTCTGATAACCGTCACTTGACGGTGGCCACGCTGGAGGAAAGGCCTTTTGTGATCGTCGAAGCTGTGGATCCTGTTACTGGCACCTGCCTCAGTAACACTGTCCCCTGCAGACGACAGTCGAACAAGACAGAAACGATAGTCGGACACACTGAGCCTTACACCAAACTGTGCTGCAAAGGCTTTTGCatagacattttgaaaaagctCTCTCGCAACATCAAGTTCTCCTACGACCTCTACTTGGTCACCAATGGCAAACACGGCAAGCTGGTGCGAGGGATCTGGAACGGTATGATCGGAGAgGTGTTTTATAAGCGAGCAGACATGGCCATTGGTTCTCTGACCATAAATGAGGAGCGCTCTGAGATCATTGACTTCTCTGTGCCGTTTGTGGAGACTGGCATCAGTGTGATGGTGGCCAGAAGCAATGGAACTGTATCTCCGTCAGCCTTCCTGGaGCCCTACAGCCCAGCGGTGTGGGTGATGATGTTTGTCATGTGTCTTACAGTCGTGGCGGTGACTGTGTTCGTGTTTGAATACTGCAGTCCTGTGGGCTACAACCGCAGCCTGGTCAGTGCCAAAGATCCAGGTGGTCCGACGTTCACCATTGGGAAGTCGGTCTGGCTGCTATGGGGGATCGTCTTCAACAACTCAGTGCCCATTGAAAACCCCAAAGGCACCACCAGTAAGATCATGGTGCTGGTATGGGCTTTCTTTGCTGTGATCTTCCTGGCCAGCTACACGGCCAACCTGGCAGCCTTCATGATCCAGGAGCAGTACATCGACACTGTTTCTGGACTGAGTGACAAGAAGTTCCAGAAACCGCAAGACCAATATCCTCCGTTCCGGTTTGGGACCGTGCCCAATGGCAGCACAGAACGAAACATAAGGAGCAATTATCCCGAAATGCATTCCCACATGGTTAAGTACAACCAGAAAGGTGTGGAGGATGCGCTCAACAGCCTCAAAACTGGGAAGCTGGACGCCTTTATATATGATGCAGCTGTGCTTAACTACATGGCCGGTAAAGATGAAGGGTGTAAATTGGTGACAATCGGTAGTGGAAAGGTATTTGCAACAACAGGCTACGGTATTGCCCTTCAGAAGGAATCTCGCTGGAAGCGCCCGATAGACCTCGCTCTCCTCCAGTTCCTTGCTGATGGTGACACTCAGAAGCTCCAGACGGTGTGGCTCACTGGGATCTGTCGTAACGAGAAGAAAGAGGTGATGAGCTCTAAGCTCGACATTGACAACATGGCCGGAGTGTTTTACATGCTTCTAGTGGCCATGGGTCTCAGTCTACTGGTCTTTGCCTGGGAACATCTACTGTACTGGAAGCTACGTCATTCTGTCCGCAAATCTGAGCGCTTGGACTTCTTGCTGGGAATTAGCAGGGGAATCTACAGCTGCTTTAATGGTGTGGAGGACACAGACCGTAAAGGGAACATGCAGAGCCCAGATGTCACCACCAGTTACACTCAGGCCAACATGCTGAAGATGCTCCAAACTGCTAAAGACATTGTCTCATCTGCGAGAGTTGAAAACTCCCTGGACAATGCCACAAAGACCATTGAAAACTGGAGTCGACGTGATCCAGAGGCAGCCAGACCCAGCCTTCCTACCTGCCTCATCGGAACGGACTTCAGCCATAGCCGCCTGCCCTGCATCGCTAGCGTTACAGACAACCACTCACCGTACCCTCAAAACATGGATAGCACCACTCAACACTTGCTGGAGAAGCCTCATGTGGGAACACGGCCTACCTCACTGCGCTACACTCTTCCTGCGCGTACCAGCCACCACCACATCTATGAACGGACGCTACCCATATCTAGCCTCAGCAGTCCCCATATTGCCATGAGAGACCCACCACCTCCCACAGCCCCAAAACCACATGTGTACGTGGACCAGTCCTGTCACCACCCTACCTCTCGCTACGTCTCTTACCGCGACTTTCAGGTGCCAGACATCTTTGTGGAACACCAGGAACCTTCGGGAAGCCATAAACAATACATGGCAGGCCTGGGTCGCAAAAAGAGGTCCCACAGCTACGTAGCAACATCTCCGGAAACTCGTCGAAGGGACGACTATGATGTTCCCCAGTCTTGTCTGGCTGAGCTCAAAAGCAACCACCTCGTGGAAAACCACTCCCATACCACACCCTGCATGAGAAGCCACTTCCAGAGACCCGGATCTAGCTGCAACTCCTGCACGAAGCTGTACCTAGAACCGGAGATGGATGATGTTCCTCTTCTAGGGAAAGATAAAATGAACCGCCGCGCCTCTTTTCTCAGGGCCACATGGGGTGGTGACAGGATCCGGCAGCTGGATGAGAAGCCCTCCACCTCTGCATCCACTACCAGCTGCATCAACATGCCTGATCTATTCCCTCGAGTGGTGGTGACCAATCCCAAGCCTTCAAAGATGTACGGCAGCACTGGTAACAACCTACGCTACAACATGGCTGTGGAGCCAGCCTATCTGGATCCAGCCCACATGGGCTCCTACCCATACAAGCCACAGAAGTTCAAGTACTCAAAGTCTATCCGCCTTCCTTCATACCGGGAAGCGATCCTACAGAACACGGCGGCCCTTCGGCGCTCCTCTTCCACACTAGTGCATGGACACTACTCAACATACCTGAACTCTTACACAGACCTGCCGGTGTATTTGGGTCCTGTTCCGCAAGGACCTGCTCACTTCCATGAGCATTCCAAAGACACGTGCCACTTGTTTCCATGCGTCAACCATTGCCCGGAAAATGCCGCCTTGGTTCCCCGGTTAGGCAGCAGACCTGTGCTGTACCAGAGCACTGCTGTTGGAGGCTACGAGGGGGCCGGGCGTTCACACGAGGAAGCGTTGCACACTGTACCGGTCTCTTCCGTGCGCAGGGACCGCAGGCAGGTTCTAGTGGCACGGAATGTACACAGTCCCTACGCCCCCCGGCCCTGGGGTAGGGTATCTAGTCTGGAGTCAGAGGTTTGAAGACCTTTGAAGAGATCTCCAGAGACAATTCCCCCCAAACGGTGAGGGAGAAATGCTGGGAACTGCTAAACGAAGTCAAGCAAAAAAGATAAAGGTGGACTAGAGGTGGTAATCTCAGTGCAATAATACCCTCAGACAGCAGGGTTGGAAGGGGGGAATGTACAAGTGATTACTGTGGAGACTTGTTTcagtatactttaaaaaaatatataagagttggggaaaaaaaactgttcttaaTCTATAATCTATTTAttgttaaactgtttttaaatgacattacaCCAGTTACACTCATTCTCTGCAAACAATTGGATGTAGCATGTTTCAAGGCAGCTTTACAACCAAAAGGGTTTGAAttgaaaatctgttttttatttatgacaGGGCATTCAACCGTTTTAAATCTGGAGAACCACTGGATAATTTTATAACATAGCCACACAAAAATGTCTTCCAAGAATTTTCTAAATCCAGGGGTTTGAGAAAGCCATTAATTGTCCAATTTTTGTCACTCCACTGATGTAATTCAGATCTGACTTCAATAATGGTGAAGAATTGATTTGCCATCTGTAGTTCCACAGCAATTtcactgtttaataaatgatgGGATGGCCTTGGGGCCAAATGAAAAGAA

Function

symbol description
grin2c Enables NMDA glutamate receptor activity and glutamate-gated calcium ion channel activity. Involved in calcium ion transmembrane import into cytosol. Is integral component of plasma membrane. Part of NMDA selective glutamate receptor complex.

NR:

description
PREDICTED: glutamate receptor ionotropic, NMDA 2C-like isoform X2

GO: NA

KEGG:

id description
K05211 GRIN2C; glutamate receptor ionotropic, NMDA 2C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235810.1 True 5801 mRNA 0.52 13 25106181 25162861

Neighbor

gene id symbol gene type direction distance location
LOC122342014 smarca4a,smarca4,LOC107658703,LOC107758124 coding upstream 96615 24994255 ~ 25009566 (+)
LOC122341374 NA coding upstream 250944 24852381 ~ 24855237 (+)
LOC122342024 chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797 coding upstream 272225 24831425 ~ 24833956 (+)
LOC122342030 LOC107658707,LOC107559242,LOC107728516,LOC107695967 coding upstream 277742 24815873 ~ 24828439 (+)
il12rb2l LOC107758123 coding upstream 324571 24771291 ~ 24781610 (+)
gaa gaa,LOC107559225 coding downstream 114931 25277792 ~ 25286925 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 coding downstream 124893 25287754 ~ 25308434 (+)
cbx4 cbx4,LOC107758118,LOC107559247,LOC107690020,LOC107670662,LOC107728779,LOC107562304 coding downstream 164859 25327720 ~ 25333865 (+)
cbx8a LOC107758117,LOC107578989,LOC107728583,LOC107689994,LOC107559248,LOC107670683 coding downstream 173324 25336185 ~ 25339891 (+)
narfl narfl,LOC107583598 coding downstream 261082 25423943 ~ 25430065 (+)
G23027 NA non-coding upstream 15747 24730359 ~ 25090434 (+)
G23044 NA non-coding upstream 18211 25079692 ~ 25087970 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding upstream 432469 24615167 ~ 24673712 (+)
G23013 LOC107658701,LOC107758126 non-coding upstream 455477 24640580 ~ 24650704 (+)
G23011 NA non-coding upstream 493430 24612526 ~ 24612751 (+)
G23077 NA non-coding downstream 216367 25379228 ~ 25382913 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding downstream 229657 25392518 ~ 25394254 (+)
G23095 NA non-coding downstream 255809 25418670 ~ 25419775 (+)
G23096 NA non-coding downstream 257411 25420272 ~ 25421130 (+)
G23069 NA non-coding downstream 267613 25430474 ~ 25434548 (+)
LOC122342019 LOC107758123 other upstream 112963 24983281 ~ 24993218 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 294604 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 575412 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 656892 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 666718 24434055 ~ 24439463 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 183923 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 249057 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 361448 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 410896 25573757 ~ 25577043 (+)
LOC122336634 NA other downstream 450298 25613159 ~ 25615905 (+)

Expression


Co-expression Network