LOC122342024 (chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797)


Basic Information

Item Value
gene id LOC122342024
gene name chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24831425 ~ 24833956 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235818.1
GTGACGTCACGTGGCTGCCGTCGCTGCCTCCATGCTGGATTTGATGTAACAGGCGTGTGGATTGATCATTGTGCCGGTGTTTGAGATTCATTGCTCGGATAAACGGCGGTCAGACGGAGCTGTCAGCAGACATGTCGTACTGCAAGCAGGAAGGTAAAGATCGCATCATATTTGTCACCAAGGAGGATCATGAAGCGCCCAGTAATGCTGAGCTTATCGAAGATGATCCAAATGATCCGTATGAGGATCACGGTCTTATTCTCCCTAATGGTGATATAAACTGGAACTGCCCGTGTTTGGGGGGTATGGCCAGTGGCCCTTGTGGACAGCAGTTCAAAGACGCCTTTTCTTGTTTCCACTATAGTAAAGAGGAAGTAAAGGGTTCGGATTGTGTGGAAAACTTCCGGAATATGCAGGAGTGTATGCAGAAGTACCCTGAGCTCTACCCTCAGGAAGATGACAGTGACAGCGCCCCCTCTGATGGGGCAGATACTGCGCCCGCTGACTCTGTCCCTACAGTCTCTCCTGAATCCACACCGGCAAGCACAGAAAACCCAGCGACTAGCTAATGTTATTTTGACTTCGTTCCCTTGAAACCTCACCGCAAAGACAGCTCCACTTTTAAGTATGAAGAGATAATATCACTGGATCGATGCTCTCCGCCTGACCGCATGATGCACAGAGATGCAGGGAGCCCTTAAATGTCCAGCTTTgtgatttaaataatcaaatgacTTTAACACGCACTTAAGGGACCTATTAAAAGAAACGGGGATCTGTATGAGTGGCACTTGTCCTGTGAAACATTATACGTCCGGCTTTGTATTTTATGGTTATTATTTGCTCCGCAACCTAAGCTTAGCTTGTTTGACTCGGATCAAAGGCCAACTGGCATTGGAGactgaataaacaaaaacatttcatgtactgttttgttgttgaacacgattaaaccattttataatta

Function

symbol description
chchd4a Predicted to enable protein-disulfide reductase activity. Predicted to be involved in 'de novo' posttranslational protein folding; mitochondrion organization; and protein maturation by protein folding. Predicted to act upstream of or within protein transport. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial intermembrane space. Is expressed in brain; eye; head; liver; and somite. Orthologous to human CHCHD4 (coiled-coil-helix-coiled-coil-helix domain containing 4).
chchd4 Enables protein-disulfide reductase activity. Involved in several processes, including mitochondrion organization; peptidyl-cysteine oxidation; and protein maturation by protein folding. Located in mitochondrial intermembrane space.

NR:

description
PREDICTED: mitochondrial intermembrane space import and assembly protein 40

GO:

id name namespace
GO:0022417 protein maturation by protein folding biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0051084 'de novo' posttranslational protein folding biological_process
GO:0045041 protein import into mitochondrial intermembrane space biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K17782 MIA40, CHCHD4; mitochondrial intermembrane space import and assembly protein 40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235818.1 True 967 mRNA 0.46 3 24831425 24833956

Neighbor

gene id symbol gene type direction distance location
LOC122342030 LOC107658707,LOC107559242,LOC107728516,LOC107695967 coding upstream 2986 24815873 ~ 24828439 (+)
il12rb2l LOC107758123 coding upstream 49815 24771291 ~ 24781610 (+)
LOC122342023 rln3a,LOC107658697,LOC107758104,LOC107559241,LOC107568237,LOC107696003 coding upstream 62154 24767629 ~ 24769271 (+)
s1pr5a s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470 coding upstream 213184 24614599 ~ 24618241 (+)
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding upstream 268836 24558746 ~ 24562589 (+)
LOC122341374 NA coding downstream 18425 24852381 ~ 24855237 (+)
LOC122342014 smarca4a,smarca4,LOC107658703,LOC107758124 coding downstream 160299 24994255 ~ 25009566 (+)
grin2ca grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554 coding downstream 272225 25106181 ~ 25162861 (+)
gaa gaa,LOC107559225 coding downstream 443836 25277792 ~ 25286925 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 coding downstream 453798 25287754 ~ 25308434 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding upstream 157713 24615167 ~ 24673712 (+)
G23013 LOC107658701,LOC107758126 non-coding upstream 180721 24640580 ~ 24650704 (+)
G23011 NA non-coding upstream 218674 24612526 ~ 24612751 (+)
G23004 NA non-coding upstream 267530 24563246 ~ 24563895 (+)
G23005 NA non-coding upstream 268298 24562812 ~ 24563127 (+)
G23031 NA non-coding downstream 123355 24957311 ~ 25267157 (+)
G23044 NA non-coding downstream 245736 25079692 ~ 25087970 (+)
G23077 NA non-coding downstream 545272 25379228 ~ 25382913 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding downstream 558562 25392518 ~ 25394254 (+)
G23095 NA non-coding downstream 584714 25418670 ~ 25419775 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 19848 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 300656 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 382136 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 391962 24434055 ~ 24439463 (+)
G22958 NA other upstream 734266 24095024 ~ 24097159 (+)
LOC122342019 LOC107758123 other downstream 149325 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 512828 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 577962 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 690353 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 739801 25573757 ~ 25577043 (+)

Expression


Co-expression Network