gaa (gaa,LOC107559225)


Basic Information

Item Value
gene id gaa
gene name gaa,LOC107559225
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25277792 ~ 25286925 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235819.1
ACACTTGCCGCAAATGAGCACATATGAAAAACCTATGCATTTAGCATTAACAGAGGCAAGAAATAATATCataaacagaaaattaataCAACgtaaatagataataaatgatacaatgacacaataaaaacgttttaataaAAGAGGAAACGCCGGGTTCGTGACGTCACGGGAACATGGCGGCGCAGGGAGGATATTTCACAATCGTTAAAATCTACTCTGGCTCGTCATCCTGACTTTGAAAACACTTGTGAACAGCGCATGTGTCATTTTCTCCCCCCTATTGGAAGAAGAAACTAGCGTTTTGTTGTGTTTACATTGATCTCACACTCTAAATAGCCTAACTAAGCCCTTTAAATGGCCAAGATTTGCTGTGGGCCCCTGCACACATTTGCACTACTGACTTCTGTACTTCTTATTCTGGTGCACAAGGACAAGAAGGCTTCATTTGCCTTTTCTCCATCGGCAGAATGGCGGCACGGTTCGAACATCTCCTACAGGAGCGCGCTCCGTACGAGAGAACATAAGCAGACTCCCTCTAGTTCACTCAGAGATCGGTGTGGAGTAGCTGTGGAGAGCCGTATCGACTGTGCCCGGGATAGAGCTCTGAGCCGGGCTGATTGTTTGGGCAGAGGGTGCTGCTATGTGCCCCTGCCTCAGTCTGGATTAGGAGGACCACCATGGTGTTTCTACCCAGTCCCTTACCCGGGCTACAAGATGGGGCCCCTGTTTCCCTCAGAGAAGGGCCAAAGAGCCACCCTGGCCCGTTCTGCACCCTCATACGTGCCCAGAGATATCCCCACACTGCAGCTAGATGTGATGCCTGAGACTTTGGGTCGTCTTCACCTCACTCTGAAGGATCCAGCATCTCCACGATATGAGGTTCCCTTTGTGACGTCCCAGTCCAGGGGCCACAAGGACGTGCAAAACCCCCTCTACGATGTTGACTTCCAACTAGATCCGTTCGGATTCATTGTACGGCGAAAATCCAATGGCCGGGTTCTccTGAATACTACAATAGGCCCGCTCCTGTTTGCAGATCAGTATCTGCAGCTCTCCACCAGCATGGCTTCCTCCCTGATATCTGGCCTGGGTGAACATTACACCCCAATCACGCTGGATCTCAACTGGAGCTCTGTTTCATTATGGAACAGAGACATGGCGCCACATAGAAACGCCAACTTGTACGGCTCCCACCCTTTCTTTTTGGTCCAAGAAGGTGATGGACAGGCACATGGAGTCTTTCTGCTCAACAGCAATGCAATGGAAGTGTTTCTGCAGCCTGCTCCAGCATTAACTTGGGTGACCGTCGGAGGAATACTGGACTTCTACATCTTCTTAGGCCCAAGTCCTCAGAGTGTGGTTCAGCAGTACCATGAGGTTATAGGTTATCCGATGATGCCACCCTACTGGTCACTGGGCTTCCACCTCTGCCGCTGGGGTTATACGTCCACCAACATAACAAGAACAGTGGTACAGCGCATGCGCCAGGCCAAGATCCCTCTAGACGTACAGTGGAATGACCTTGACTATGCAGACCAAAGAAGAGTCTTTACGTTTGATCCCCAAAGATTCGGAGATTTGCCCCGAATGGTTGAAGAGCTCCATCAGCTGGGCATGAAGTATGTGCTCATTCTGGATCCTGGCATCAGCAGTACGAGTCCTCCTGGTTCATATAAACCTTTTGATGACGGGCTAAAGAGAGGAGTGTTCATCAAAAACTCCACTGGACAGATCCTTATTGGGAAAGTATGGCCGGGTCCAACTGCTTTTCCAGATTTCACCAATCCCACAACACGGGACTGGTGGATGGACTGCATCAGAGTCTTTCACAGCCAGGTACCTGTGGATGGACTCTGGATAGACATGAATGAGCCGTCAAATTTTGTGCAGGGCTCTGCGGATGGGTGTCCTGACTCCGACTTGGAGAATCCACCTTATACGCCAGATGTGATCGGAGGTCAGTTAAGCTCAGGAACTCTGTGTGCGTCCTCGCAGCAGCATCTGTCCAGTCACTACGACCTGCACAATCTGTATGGGCTGACCGAGGCCATCGCCACGCACAGGGCACTGTTGAAAGTGAAGAGCACTCGGCCGTTTGTCCTGTCCCGGTCGTCTTTTCCAGGACTGGGCCGTTTCTCTGCGCACTGGACTGGAGACGTGCGGAGTGACTGGGAGCAGCTTCGCTTTTCAGTACCTGGTGTGCTCCTGTTTGGACTCTATGGAGTCCCGCTGGTGGGTGCTGATGTCTGTGGGTTTGGTGGAGACACTACTGAAGAGCTGTGTGTGCGCTGGACACAACTTGGAGCCTTTTACCCCTTTATGAGAAACCATAATGACAGACCCAATGCGCCCCAGGAGCCGTATGTGTTCAGCCAGCAAGCCCAGGATGCCATGAGGACTGCGATCAGACTGCGATACTCTCTGCTGCCCTTCCTCTACACACTGTttcatcacacacactcctccggCAGCACCGTGGCCCGTCCTCTCTTCCTTGAGTTTCCCACTGATCCAGATTGCCAGAGCATCGACGGGCAGTTCCTGTGGGGCAGTTCTCTGCTCATCAGCCCCGTCCTGGAGGAGCGAGCGCTGGAGGTGACGGCCTATCTTCCCCCGGGGACCTGGTACAGCCTGCACGATGGGGAAGCTTATCACAGCAAAGGGCAATACGTTCTGCTCCCTGCTCCTTTAGACACCATTAATGTTCACGTGAGAGAAGGGAGCATCATCCCGCAGCAGGTTCCCGCACTGACGACCGCGACATCCCGCGGGAACCCTTTCACCCTAGTCGTGGCGCTGTCCGTGGGAAACCGGGCGAAAGGGGAGCTCTTCTGGGATGACGGGGAAAGTCTGGACACGTTTGAGCATGGAAATTATTCATACGTTCTGTTCTTTGCTGAAGAGTCTTACGTGATCAGTAAGCCAGTAAAACTAAACGGATCTCTGGATGGTCTGGTCCTGGGGGAGGTATGTGTTTTTGGGGTTCAGACTGCACCTACAGCCGTGTGGGCCAATGGCCAAAAGCTTCATGGCTTCTCCTACGACCCAGACAGCAAGgttctTGCAGCGCCAGGTCTGGACTTACCCATGACCGCCACCATCACGGTCCAGTGGAGCTGATGGGAAATCTCTGCCGTGTTCGTTGTTTTTTACAGTTATCTTTAACAGCATGTTTCTGCTGTACCGTTTCTTTTAAATATCGTTTTTGctataaaataaaccttttattttattgaatgttCCTAATGTTTCACTGAATAATCAGTGTTTCACATAACCCATACATTtgtctttaaatgtttatataatttttttaatatcatttacatttagcagactTACCAATTGAAGCAAGCAAAACAGATCAATAATATGCAAGTCCTATGACAAGTCTCGTTTTttacattgtgtatttaaaacaaaaagaatatatgcttataatattatacaaataaatatatagctgCATACGCATAGTAGGGGTATTGCACTTTTATCGATTAAGCTCCGATTTAAATagagtttaatataataatgctgCTCCAGATGCATTTCCTATTATTATAAACGTcgtactgcttaatattttggtggaaactgtgatcatttttattttaggattattaaatattaaataaaacaataaaacaatgcaataaaaataataa

Function

symbol description
gaa Enables alpha-glucosidase activity. Predicted to be involved in glycogen catabolic process and lysosome organization. Predicted to act upstream of or within carbohydrate metabolic process. Is expressed in several structures, including eye; heart; liver; muscle; and pleuroperitoneal region. Used to study glycogen storage disease II. Human ortholog(s) of this gene implicated in glycogen storage disease II. Orthologous to human GAA (alpha glucosidase).

NR:

description
PREDICTED: lysosomal alpha-glucosidase

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K12316 GAA; lysosomal alpha-glucosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235819.1 True 3671 mRNA 0.48 22 25277792 25286925

Neighbor

gene id symbol gene type direction distance location
grin2ca grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554 coding upstream 114931 25106181 ~ 25162861 (+)
LOC122342014 smarca4a,smarca4,LOC107658703,LOC107758124 coding upstream 268226 24994255 ~ 25009566 (+)
LOC122341374 NA coding upstream 422555 24852381 ~ 24855237 (+)
LOC122342024 chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797 coding upstream 443836 24831425 ~ 24833956 (+)
LOC122342030 LOC107658707,LOC107559242,LOC107728516,LOC107695967 coding upstream 449353 24815873 ~ 24828439 (+)
tbc1d16 tbc1d16,LOC107559246,LOC107689993,LOC107670685,LOC107562324 coding downstream 829 25287754 ~ 25308434 (+)
cbx4 cbx4,LOC107758118,LOC107559247,LOC107690020,LOC107670662,LOC107728779,LOC107562304 coding downstream 40795 25327720 ~ 25333865 (+)
cbx8a LOC107758117,LOC107578989,LOC107728583,LOC107689994,LOC107559248,LOC107670683 coding downstream 49260 25336185 ~ 25339891 (+)
narfl narfl,LOC107583598 coding downstream 137018 25423943 ~ 25430065 (+)
fahd1 fahd1,LOC107586194,LOC107555652,LOC107586183,LOC107690023 coding downstream 149238 25436163 ~ 25437150 (+)
G23031 NA non-coding upstream 10635 24957311 ~ 25267157 (+)
G23027 NA non-coding upstream 187358 24730359 ~ 25090434 (+)
G23044 NA non-coding upstream 189822 25079692 ~ 25087970 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding upstream 604080 24615167 ~ 24673712 (+)
G23013 LOC107658701,LOC107758126 non-coding upstream 627088 24640580 ~ 24650704 (+)
G23077 NA non-coding downstream 92303 25379228 ~ 25382913 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding downstream 105593 25392518 ~ 25394254 (+)
G23095 NA non-coding downstream 131745 25418670 ~ 25419775 (+)
G23096 NA non-coding downstream 133347 25420272 ~ 25421130 (+)
G23069 NA non-coding downstream 143549 25430474 ~ 25434548 (+)
LOC122342019 LOC107758123 other upstream 284574 24983281 ~ 24993218 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 466215 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 747023 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 828503 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 838329 24434055 ~ 24439463 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 59859 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 124993 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 237384 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 286832 25573757 ~ 25577043 (+)
LOC122336634 NA other downstream 326234 25613159 ~ 25615905 (+)

Expression


Co-expression Network