LOC122342030 (LOC107658707,LOC107559242,LOC107728516,LOC107695967)


Basic Information

Item Value
gene id LOC122342030
gene name LOC107658707,LOC107559242,LOC107728516,LOC107695967
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24815873 ~ 24828439 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235820.1
GAGAAACCATGCAGCGGTCAGAGGGCGGCTCAGAGTCGGCGTCCACTGTGGCGCTGAGAACCTCCACTTCGGCCCAGGCGCCGGTGGTTCAGCCCGTTCCCGCCTCGCAACAGgtcCAGCAGGTTCAGCATGTGTACCAGTCCCAGGTGCAGTATGTGGAGGGAGCAGAAGCAGTCTACCCCAATGGCACAATtcgaACTGCATACTCGTACAACCCAGAGTCCCAGCTGTACGGACAGGGCAGCGGAAGCACCTATTTTGACACTCAAGCAGGTGGTACTCAGGTTACCACCGTCGTCTCCTCTGCTGGCGGAGTGCCTGCCCACAGCATGGTGGGAATTGCCATGGACGTGGGCAGCAGTCAGATCATTTCCAGCGGCAGCGCCTACTTGATCCACGGAGGGATGGAGAGCGGCCGCCACCATACCTCTCACTCCTCGCGCTCCTCATCCGCAATGCTTGAAGTGGCGATTGAAAACCTCCAAAAGTCAGAAGGGATTGCCACTCACAAAAGCAGCCTGCTCAACAGCCATttgCAGTGGCTGTTGGACAATTATGAAACGGCTGAGGGTGTGAGTTTGCCGCGGAGCTCTCTTTATAACCACTATCTCAGACACTGTCAGGAGCAAAAACTGGATCCGGTTAATGCAGCCTCCTTTGGCAAACTCATCCGATCTGTCTTCATGGGCCTTCGCACACGCCGACTTGGCACAAGgggGAACTCAAAATACCATTATTACGGTATTCGTCTCAAGCCTGACTCGCCTCTCAACCGCTTGCAGGAGGACACACAGTACATGGCAATGAGACAACAACCTGTCCATCAGAAACAGAGGTGGAAGCCGGTACAGAAGGTGGAGGGAATCACTAACGGAATGTCGTCAGGATCCgggcagcaacagcagcagcagcagagctcGGGTCTGTCGGATATCAGCACCCAGGTCCAGCAGTACCAGCAGTTTCTAGATGCGTCCCGGGCTCTCCCAGAATTCCCCGATGTTGACCTGCAGGGTAGAGCTTTACCAGAGGGCATTGAGCTGGAACATCTTAAAAGCTTTCAGTTGCTCTACAGAGAACACTGCGAAGCCATTCTGGACGTGATGGTCAACCTTCAGTTCCCTTTGGTGGAGACTCTTTGGAAAACGTTTTGGAGGTTCAGTGAAAGTCAGGCAGGGGACTCGGCAACTCTAGCTGTGCATGACGAGTCTGAGAAGAGACTGCCCAAGTCATGTTTGGTGCTTCTCTGTAAATATGATCCAGTGCTCCGCTGGAGTCGTGACTGCGACAACACGTTGTACCAGGGCCTGGTGGAGATGCTCATCCCAGACGTTCTGAGACCTATTCCCAgtgccttaACACAAGCCATCCGAAACTTTGCGAAAAGTCTTGAGAGCTGGCTGACCAACGCCATGATGAACATTCCTGAAGAGATGGTTCGTGTGAAGGTGACGTCTGCAAGTGCCTTCGCTCAGACCCTGCGCAGGTACACCTCTCTAAACCACCTGGCCCAAGCAGCTCGTGCCGTACTGCAAAACACGGCACAGATCAACCAGATGCTCAGCGACCTCAACAGAGTGGATTTTGCCAATGTGCAGGAACAGGCCTCCTGGGTGTGCCGCTGCGAGGATCGGGTGGTGCAGCGGCTGGAGCAGGACTTCAAACTGACCCTGCAGCAGCAGAACTCTCTGGAGCAGTGGGCGGCCTGGCTGGATGGGGTGGTCTCGCAGGTCTTAAAGCCCTACCAGTCTAGCTCTGCCTTTCCAAAAGCAGCTAAACTCTTCCTGCTGAAATGGAGCTTTTACAGCTCTATGGTGATCAGAGACCTGACTCTTCGCAGTGCCGCAAGCTTCGGCTCGTTTcacctcatccgcctgctgtaTGATGAGTACATGTACTACCTGATAGAGCACAGAGTCGCCCAGGCCAAGGGTGAAACTCCCATCGCTGTCATGGGAGAGGTACAAGCACACTCACTGAAATCTTTACCTAACCTCAGACACACTTCTCACTTCGGTGTGTAAGACCAAACAAACGTGCGTCACCCCTCTCATAACAGGATATT

Function

NR:

description
PREDICTED: MHC class II regulatory factor RFX1-like isoform X3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09173 RFX1_2_3; regulatory factor X 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235820.1 True 2065 mRNA 0.54 14 24815873 24828439

Neighbor

gene id symbol gene type direction distance location
il12rb2l LOC107758123 coding upstream 34263 24771291 ~ 24781610 (+)
LOC122342023 rln3a,LOC107658697,LOC107758104,LOC107559241,LOC107568237,LOC107696003 coding upstream 46602 24767629 ~ 24769271 (+)
s1pr5a s1pr5a,LOC107758128,LOC107577264,LOC107658699,LOC107728470 coding upstream 197632 24614599 ~ 24618241 (+)
si:dkeyp-69e1.8 LOC107758106,LOC107658694,LOC107703890,LOC107728849,LOC107563364,LOC107559220 coding upstream 253284 24558746 ~ 24562589 (+)
hmgxb4a LOC107658693,LOC107758107,LOC107728447,LOC107703878,LOC107563362 coding upstream 258761 24549227 ~ 24557112 (+)
LOC122342024 chchd4a,chchd4,LOC107574929,LOC107718204,LOC107715767,LOC107551797 coding downstream 2986 24831425 ~ 24833956 (+)
LOC122341374 NA coding downstream 23942 24852381 ~ 24855237 (+)
LOC122342014 smarca4a,smarca4,LOC107658703,LOC107758124 coding downstream 165816 24994255 ~ 25009566 (+)
grin2ca grin2c,LOC107658706,LOC107758122,LOC107559244,LOC100329743,LOC107728554 coding downstream 277742 25106181 ~ 25162861 (+)
gaa gaa,LOC107559225 coding downstream 449353 25277792 ~ 25286925 (+)
G23014 ldlra,ldlr,LOC107758126,LOC107658701 non-coding upstream 142161 24615167 ~ 24673712 (+)
G23013 LOC107658701,LOC107758126 non-coding upstream 165169 24640580 ~ 24650704 (+)
G23011 NA non-coding upstream 203122 24612526 ~ 24612751 (+)
G23004 NA non-coding upstream 251978 24563246 ~ 24563895 (+)
G23005 NA non-coding upstream 252746 24562812 ~ 24563127 (+)
G23031 NA non-coding downstream 128872 24957311 ~ 25267157 (+)
G23044 NA non-coding downstream 251253 25079692 ~ 25087970 (+)
G23077 NA non-coding downstream 550789 25379228 ~ 25382913 (+)
G23078 grid2ipa,LOC107559228,LOC107758114,LOC107689997,LOC107728614,LOC107670677,LOC107583579 non-coding downstream 564079 25392518 ~ 25394254 (+)
G23095 NA non-coding downstream 590231 25418670 ~ 25419775 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other upstream 4296 24721526 ~ 24811577 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other upstream 285104 24525280 ~ 24530769 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other upstream 366584 24446878 ~ 24449289 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other upstream 376410 24434055 ~ 24439463 (+)
G22958 NA other upstream 718714 24095024 ~ 24097159 (+)
LOC122342019 LOC107758123 other downstream 154842 24983281 ~ 24993218 (+)
arhgap17b arhgap17b,LOC107559249,LOC107758115,LOC107670674,LOC107689995,LOC107728593 other downstream 518345 25346784 ~ 25374498 (+)
G23061 rps2,LOC107758112,LOC107690003,LOC107555664 other downstream 583479 25411918 ~ 25447270 (+)
tob1a tob1a,LOC107690006,LOC107758110,LOC107555665,LOC107583660,LOC107728672,LOC107670673 other downstream 695870 25524309 ~ 25569403 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other downstream 745318 25573757 ~ 25577043 (+)

Expression


Co-expression Network