chst12a (chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724)


Basic Information

Item Value
gene id chst12a
gene name chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 16222200 ~ 16229178 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235826.1
AAAATACGCCTTTTAGCAGGCTCATTGGAAGTCCGGTAGAGCATGTGCTCTATAAGTGTTTCTAAAAACAAAGTGCGGGTCTGTGCTGCCTAAAAGTCCTCATCACCGTACGGTTCAGCAGCGGAGCGGAGTCTTGCGCACACTTGGAAATCTCGCGACATCTGCGCGCGCGGAGCACTAAAGCGCTGCTGTGTCAACACCCCGCGCGCACATCCCTCCCCAGCTGACGCCGTCTGCCTGCCGAGAAATTCGCTCTCCTGCGATGAGACTGTGATGAATGCAGTCTGGGCTGTCGGTTGTGTAATGGAGTTGAGGTGAGAATGGCACTTTCTCAGTCAAAATCAACCAAAATGGGAAAGTCGAGACTGTTCCGCATTTTTATGATTGTGGGCGCCGTCTTCATGATACTTCTTATAATCATATACTGGGATGATGTGGGGGCCTCAAATTTTTACCTGCACACAACCATCTCCGGGCCCCATCCGTCGCACCTCTCTCCGCAGAGCCGTCGTGACCCAGAAAAGAAAATAGAGGAAGACAAAGAGGGCTCGTTTTTGACGGACATTGATGCTTTTGTCAACCAGTTTTTAGAAGGAACGGCAGACCCCACGGAACAGGTGAGAGGAGAACCGCCGCCTGGAGACCCTCACAATCAGTCCTCGGAGAAATCGGAGGAGAAATTCGTCCCGAGACGAGAGTGGAAGATCCATCTGACGTCAATAGACCCCGAGAAAAAACAAAGGCAGGAGAGTAGAAAGCAGCTGATCCAAGATGTGTGCAGTAACAAAAGTTACTTCGACTTCCCCGGAAAGAACAGGACTTTTGACGACATACCCAATAAAGAGTTGGATCACCTCATTGTGGACGACAGGCATGGGATTATTTACTGCTACGTTCCCAAAGTGGCCTGCACAAACTGGAAGCGCATCATGATCGTGCTGAGCGAGAGCCTGTTGTTGGACGGTGTGCCCTACCAAGACCCTCTAGATGTTCCTCAGGAGCTCATCCATAACAGTAGCCTGCACTTCACCTTCAACAAGTTCTGGAAGCGCTATGGAAAGTTCTCTCGGCACCTCATGAAAATCAAGCTTAAGAAATACACCAAGTTTTTATTCGTCAGGGATCCTTTCGTGCGACTGATCTCTGCCTATCGCAACAAATTCGAGCAAGAGAATGAGGACTTCTACAAAAGATTCGCGGTCATCATGTTGAGAAAATACGGCAATTACACGGATCCACCGGCATCGGTCGTGGACGCTTTCGCTGCTGGGATTCGACCGTCTTTCTCGAATTTCGTTCAGTATTTATTGGATCCTAGCACTGAGAAAGAGATGCCTTTCAACGAGCACTGGAGACAGATGTACCGTCTGTGCCATCCCTGCCAGATAAATTATGATTTCGTGGGCAAGCTGGAGACCTTGGATGAGGACGCTGAGCAGTTGTTGCGGATTCTCCGCGTAGACAATGTCGTCGAGTTCCCGCAAAGTCATCGCAACCGAACAGTCAGCAGTTGGGAGCAGGACTGGTTCTCCAACATACCGCTGGAGTCCAGAAAAGAGCTGTACAGGCTGTATGAAGCCGACTTTAAACTGTTCGGGTATTCCAAACCAGAGAAGCTGTTACACGAGTGATATGCTGATCGCCAACTTTACTGAGGTGCTGACGAGATTCTGACAGCACAAAAAACAGGGCAATAGCAGTTCCTGCTGCTTGGTTCTTAATGTGCGGCTCTTTCACATGATGCTGTTTATGAAGGCCCTTTCACATGACCAGTGTCCAGAGGATCACCGTTTGGCTAATTGGTCCAGTAGGTAGATATCTTAATTGAATCAGGTGCTTCTGAAAAGCATCTTTCTCCGatgacagataaaaaaatatggcGCCCCCCACAcatcaattgaaaaaaaaaaatagcatttgtcTCCAAAACTTGATGTCTCCAGAACTGATTTTTGTGATGTTGTGCTAAATTGTTCTCTTGTTCGTTTGTGGCCATGATTGAACTAAATTAGAAAGAGGGAATAAAATGATAAGCCACGACTGAACTAAAACAAGTGAACGAATTAATACATGGCCATGATTTAGtgaataatttaatgcaaagtggccaaaaataaaataagtgagtGAATTAGTACACCATggttgtaatttaaataaaattagtggACAAATTAGTACAAAATGGCCACAAATCTTTACTTTGTGGTCATGAtatctattttttctttcacatcGCATACATACAAAAGTATTTGtgatttacaaatattataatggATGTGTTGGCagtgcctgttttttttctatcttctGAATTAAAAGTTTGAGGGCTCTTAAAACATAATATGGACaggttatttaaattttttttcctggGCTGCTAACTTATATAAGGAGATCATGATAGTCTCTAGAGAAGGGTTTGATGCACTTAGCCAATCAGGAAAGAGCATGAAATGCATTGCTGACTGTGTCACTTTGAATAGATCAGTGATAATTGGTGCAGCAAACTCAATTATGGTGTGATGTTAACATTAACTCTAAAGGTAAAGGTAACGTTGAGTCATCTGAGTCATGTGAAAGAGCCTTAAGGCCTTTTTGGAGCTTGTGGGCATTGAAAGTAATACTGTAGTGAATATACATTCCTTGCACACAGGTTACATTTCCTCAGTCCATTTCCCAGTGTCCCattaaatgtgttactgttatttgtATGGACCTCATGGACAATTTCAGAGACATTTTGATGTTTAACTACTCAAAGAAGCCtgcacaattttctttttttgatatCCTCAACAGTGTTTTAAGAACAAACTCATCACCTCATTAGTATTATTCTTATAAGGTGGATGGATGTGATAATCCCAGTAATTTTAAGTTGTATAGTTGTATGTTTTACCTAAAGAACCACCAAACTAAAATATcacaagacatttaaaaaaaaaagtattgtacaTTTAGCAAGTGCACATATTAGagtattttagaatatttttgtaaactttTACAGTTAAATGTGAAAAGTGAAGGCACTTTTGTCCTTGGAAAAAAGCgacataatattttgaaatgcaagcaaacgttttacagttttgttttgtttttatcacaaAGGGATCACTGCTCTTACAGcagtttcatttcttttcttgaaaatggcgcattttttaaacacagaaacctcaatttttatgtttccatggtttttttttttttcagtcttttaaaGTAGTTCATGGTCCTTTATTGCACAAAATTGCCAGTGTTCTGCAGTGAAGCAAGCAAATGGAGTAAATGACATCAAAAagatatttctttctttgtaaTAGAGGCTGAAGTATTCCTATTATGGCCTGTTCTTGTCAAGCAAATCTTGCCTTTCATCATTTTGGTCCTTTTATTCTTTTAGTGTGTAGCAGGGACTGGATGAGCCCTCTGATCTGCAGCATGCTATAGATGTTAGCATGTGTGCCTTGCAGTCCTTCATAAATATGCATCACTCATGAATATTGTAGCAAACTTAgcgtttttttttgctctgttaGGTGTAGAGGGTAAAACAATGGCCTTGTTTGGATATTGTTAGGAATATAATCGCAGGCACAGGGTATTTATTTCTTACTTAGCGAGTTATTTAGCAAGAGTTATTTGGTGTAATTGCTTTAGACCGTTGAAGCACAAATGTCAGTATTGTTTATAGTTCCTCATCTAGTCAAGAGTCAAACGTGGGCATgtgcaaaagaaatatataaggGTTTATTagggttatttttaaaaaaaagtattttctttacCAAGAAagtgtttccttttttaatttccatCGTGTTTTTGTGCCGCATTTTGCACATTTGATCACATGTATAAAATCGATCTCTAAGGCAGTGAGAGGTAAAAGGATGGAAGAAAGCGTGTTTGGTCGTATATTGTAGTAGGGAATGATACTGTGGAGCACAAGTGTAGCATGATCGTTGTGGAAGTGACGGGCCAGAAGGAACAGGACGTCCCGGTTCAGGGGAAGCCACAATTCTGAAATACCGCACTGTTGGGCTCATTAGGTAGCTGTGCCTTTGGagaaaagtttacatttaaaaaaaaaaagtatttttgtaagcGAGTCTCTGACTTGCAGTTAAAACAATCAAAGCTCCtactttcaaaaaaagtgttaaagtgtAGTTGCGCTTATATATATTGCATCAGATTTGTAGCCACGATTTTTGGCTGTGCTGTTGAGGCTTGTTAGATCAGTTTCAACTTTTCCTATTTCATAAACCATAAGTTCTGTTATGTGTGCAGTTGCCTATGCTGTTGATGAGGACCCGTTTTGTATACATTTGGTGCCACGCTGTACAAAGAAAGGTTTGTTTAGTGATTGTTTTGATGCCAATATGAggaaaatttgtattttttttttttttacctggcaTACTTTTCAGTCATAGGAATTTCTTAGTTGCATGAAATATGTTCAAGAGATTATGCTGAGAACAAAAGGGAAACATATGTTACATTAAATCAGGTCTTAGCAAGTGTGTTCTTCATATTtggtttgctttgcttttttccctTTGGGCAATGTACATAGctcttcttttatttattatggtattatttaatgcttcaatttcaaaagaaaaaagttcaaTAAAGTTCAATGCATGGTGCAAACACTGTAA

Function

symbol description
chst12a Predicted to enable sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in female organism; head; notochord; pectoral fin; and pharyngeal arch cartilage. Orthologous to human CHST12 (carbohydrate sulfotransferase 12).
chst12 Enables chondroitin 4-sulfotransferase activity. Involved in chondroitin sulfate biosynthetic process and dermatan sulfate biosynthetic process. Located in membrane.

NR:

description
PREDICTED: carbohydrate sulfotransferase 12-like

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K04742 CHST12; chondroitin 4-sulfotransferase 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235826.1 True 4685 mRNA 0.40 2 16222200 16229178

Neighbor

gene id symbol gene type direction distance location
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding upstream 985 16212367 ~ 16221215 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding upstream 47110 16150853 ~ 16175090 (+)
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding upstream 375234 15835083 ~ 15846966 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding upstream 393217 15823776 ~ 15828983 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding upstream 398765 15819654 ~ 15823435 (+)
lfng lfng,LOC107703400,LOC107674646,LOC107758333 coding downstream 64044 16293222 ~ 16301224 (+)
snx8a snx8,LOC107758331,LOC107592787,LOC107674736,LOC107703396 coding downstream 130734 16359912 ~ 16369501 (+)
mrm2 mrm2,ftsj2,LOC107703397,LOC107674604 coding downstream 143591 16372769 ~ 16375491 (+)
LOC122342073 NA coding downstream 232140 16461318 ~ 16462690 (+)
LOC122341966 NA coding downstream 244644 16473822 ~ 16475189 (+)
LOC122333245 NA non-coding upstream 341531 15879468 ~ 15880669 (+)
G20469 NA non-coding upstream 342871 15879130 ~ 15879329 (+)
G20468 NA non-coding upstream 343774 15878189 ~ 15878426 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding upstream 346241 15874033 ~ 15875959 (+)
G20465 NA non-coding upstream 348275 15872802 ~ 15873925 (+)
G20647 NA non-coding downstream 63427 16292605 ~ 16292806 (+)
G20656 NA non-coding downstream 78620 16307798 ~ 16308018 (+)
LOC122342129 NA non-coding downstream 367114 16596292 ~ 16597215 (+)
G20744 NA non-coding downstream 557654 16786832 ~ 16787050 (+)
G20798 NA non-coding downstream 760034 16989212 ~ 17052645 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other upstream 14354 16179620 ~ 16207846 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 478006 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 942087 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 1037327 15149112 ~ 15184873 (+)
LOC122331507 psmg3,LOC107703392 other downstream 461525 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 541367 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 883870 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 908752 17137930 ~ 17200630 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other downstream 1490004 17719182 ~ 17723423 (+)

Expression


Co-expression Network