LOC122342038 (mcm5,LOC107703892,LOC107670920)


Basic Information

Item Value
gene id LOC122342038
gene name mcm5,LOC107703892,LOC107670920
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24142816 ~ 24148359 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235828.1
TTTGCCGCGAAATCAAGCGCGCGCGTAGCACGGGGGCGCACGGTTCTTTCTCGTCTGCAACGTTATAGCGGTAGTTAAGCTCAGCGAAGACAGCACTTGTTTAAGTAACACCGTATTGATCGTTTATTACAAGGAATATTAGCAGAATGTCGGGGTTTGACGATCCAGGAGTTTATTACAGTGACAGTTTTGGAGGAGGCGAAGGCTTCGGCGATGAAGGGGTCGTGAAACGCAGTCAGATCAAAAAGAAGTTCCGTGAGTTTTTGAGGCAGTTCAGAGTGGGCACCGATCGCACCGGATTCACCTACAAATACAGAGATGAACTCAAGAGGCACTATACTTTGGGAGAGTACTGGATTGAGGTGGAAATGGAGGATTTGGCCAGTTTTGATGAAGACCTGTCAGACTGTCTGTATAAATTGCCTACTGAGAACCTGCCTTTGCTGGAGGAGGCGGCGCAGGAAGTGGCCGATGAGGTCACACGTCCCCGGCCCGTAGGAGAAGAGTCTGTGCAGGACATACAGGTCATGCTGAAGAGCGACGCTCACCCGGCCTCCATCCGCAGCCTGAAATCGGAGCAGGTGTCGCGTCTCGTGAAGATTCCCGGTATTATCATATCCTCGACGGCTGTGAGGGCCAAAGCCACCAAAGTGTGCCTCCAGTGCCGCGGATGCAAAGCAGTCATCAGCAACATTCCTCTGCCGCCGGGACTGCAGGGATACGCTCTGCCCCGCAAGTGCAACACGGAGCAGGCGGGCCGTGTCAAGTGCCCCGTGGATCCGTACTTCATTATTCCGGACAGATGCGTGTGTGTGGATTTCCAAACGCTGCGCCTGCAGGAAGCTCCTGATGCCGTTCCACACGGAGAGATGCCCCGACACATGCAGCTCTACTGCGACAGGTACTTGTGTGACCGTGTAGTACCAGGAAACAGAGTAACAGTCATGGGCATCTACTCCATCAAGAAAGTGGCGCAGACCAAGGCCAAAGGTCGTGATAAGGGAGCAGGTGTGGGCATCCGGTCAGCGTACCTGCGCGTGGTCGGCATTGAAGTGGACACCGAAGGAGCAGGACGTGGAGCCACTGGTTCAGTTTCTCctcaggaggaggaggagttaAGGGCTCTGGCTTCGTCTCCGTCCATCTACGACTCCCTCGCTCGCTCTCTGGCCCCGTCCATCTATGGCAGCGATGACCTGAAGAAAGCCATAGCCTGTCTCCTGTTTGGGGGCTCCAGGAAGAGGTTGCCTGATGGTTTGACACGCAGAGGTGATATAAACCTGTTGATGTTGGGAGATCCCGGCACGGCCAAGTCACAGTTGCTGAAGTTTGTGGAGAGATGTTCTCCGATTGGGGTCTACACGTCTGGTAAAGGCAGCAGTGCAGCTGGTTTGACCGCCTCCGTGCTGCGAGACCCCAGCACCCGAGGTTTCGTCATGGAGGGTGGTGCCATGGTGCTGGCTGATGGAGGAGTGGTCTGCATTGACGAGTTCGACAAGatGAGAGAGGATGACCGGGTCGCCATCCACGAGGCCATGGAGCAGCAGACCATTTCTATTGCAAAGGCTGGCATCACCACCACTCTGAACTCCCGCTGCTCCGTACTGGCCGCCGCCAACTCCGTGTTCGGCCGCTGGGATGATACAAAAGGAGAGGACAACATAGACTTCATGCCCACCATTCTGTCTCGATTCGACATGATCTTCATCATCAAAGACCAGCACGACCAGCAGCGAGACATGACCTTGGCCCGGCACGTGATGAACGTTCACCTGAGCGCTCAGATGCAGACGGAGGGAGTCGAGGGAGAGATTCCTCTGGCCACGCTGAAGAAATACATCGCCTACAGCAGAACGAAATGTGGACCCCGTCTGTCCGCGGCCGCCGCGGAGAAACTGAAGAACAGGTACGTGCTGATGAGGAGTGGAGCGAAGGAACACGAGAGAGAGACCGACAGACGCGTGTCCATCCCCATCACTGTCAGGCAGCTCGAGGCCGTGGTGCGTATTGCAGAGTCTCTCGCTAAGATGAAGCTGCAGCCCATCGCTGGAGAGGAGGAGGTGGATGAGGCTCTCAGACTCTTCCAGGTGTCCACGCTGGACGCGGCTCTGTCCGGGAGCCTTTCCGGTGTTGAAGGATTTACTTCTCAGGCGGATCAGGAAATGATCTCTCGCATAGAAAAGCAGCTGAAGAGACGCTTCGCCATCGGCTCCCAGGTGTCTGAACACAGCATCATACAGGACTTCACCAAACAGAAATATCCAGAACACGCCATTCACAAAGTCCTTCATTTGATGATGAGGAGGGGCGAGCTGCAGCACCGCATGCAGAGGAAGGTTTTGTACAGGGTCAAGTAGACGCCTGCTTGCCTCGCGTTGTTCTGCTTGACACAAGTCGGGTTTATTGTACATGGTTGTTTGGACACTTTATGGCTGGAGATATGATTTGAGTATGTTAGCATTGTGACGGTATGCTTCACTGTCTTCATGTGGTTTTTCAGTGGAAGTAATCTGATTGTCATGGTCGTGTTTTGTATGGAAGCATAATAAAGCATGTAAGAAATTAA

Function

symbol description
mcm5 Predicted to enable single-stranded DNA binding activity. Predicted to contribute to 3'-5' DNA helicase activity and single-stranded DNA helicase activity. Acts upstream of or within chordate embryonic development; mitotic cell cycle; and negative regulation of apoptotic process. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; head; nervous system; pronephric duct; and tail bud. Human ortholog(s) of this gene implicated in Meier-Gorlin syndrome 8. Orthologous to human MCM5 (minichromosome maintenance complex component 5).

NR:

description
PREDICTED: DNA replication licensing factor MCM5

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0009790 embryo development biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02209 MCM5, CDC46; DNA replication licensing factor MCM5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235828.1 True 2566 mRNA 0.54 16 24142816 24148359

Neighbor

gene id symbol gene type direction distance location
LOC122342047 gcat,LOC107703894,LOC107670921 coding upstream 695 24138543 ~ 24142121 (+)
tom1 LOC107672685,LOC107583252,LOC107719328,LOC107563358,LOC107703898 coding upstream 48206 24083986 ~ 24094610 (+)
zgc:171844 zgc:171844,LOC107672688,LOC107719339,LOC107583313,LOC107703875 coding upstream 70972 24058693 ~ 24071844 (+)
LOC122342045 mfsd6l,LOC107719337,LOC107583315,LOC107728393,LOC107563357,LOC107703882 coding upstream 86425 24051922 ~ 24056391 (+)
mchr1b mchr1b,LOC107719342,LOC107672125,LOC107672690,LOC107602308 coding upstream 265142 23873131 ~ 23877674 (+)
LOC122342039 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding downstream 7997 24156356 ~ 24162242 (+)
LOC122341365 NA coding downstream 220854 24369213 ~ 24374564 (+)
gcat gcat,LOC107703894,LOC107670921 coding downstream 372669 24521028 ~ 24524600 (+)
foxred2 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding downstream 390964 24539323 ~ 24545214 (+)
ankrd54 ankrd54,LOC107670919,LOC107559232,LOC107563363,LOC107719341,LOC107728844,LOC107703879 coding downstream 397052 24545411 ~ 24549093 (+)
LOC122342068 NA non-coding upstream 18937 24122208 ~ 24123879 (+)
G22963 NA non-coding upstream 22538 24116920 ~ 24120278 (+)
LOC122342058 NA non-coding upstream 35064 24100850 ~ 24107752 (+)
G22957 NA non-coding upstream 48221 24081566 ~ 24094595 (+)
LOC122342062 NA non-coding upstream 59332 24081517 ~ 24083484 (+)
LOC122342066 NA non-coding downstream 48499 24196858 ~ 24198029 (+)
LOC122342069 NA non-coding downstream 49868 24198227 ~ 24205735 (+)
LOC122342064 NA non-coding downstream 52746 24201105 ~ 24203008 (+)
LOC122342061 NA non-coding downstream 61215 24209574 ~ 24210462 (+)
LOC122342065 NA non-coding downstream 63988 24212347 ~ 24214974 (+)
G22958 NA other upstream 45657 24095024 ~ 24097159 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 90903 24039902 ~ 24051913 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other upstream 421097 23709503 ~ 23721719 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other upstream 711050 23424621 ~ 23431766 (+)
LOC122341907 NA other upstream 734002 23403441 ~ 23408814 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other downstream 285696 24434055 ~ 24439463 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other downstream 298519 24446878 ~ 24449289 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other downstream 376921 24525280 ~ 24530769 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 573167 24721526 ~ 24811577 (+)
LOC122342019 LOC107758123 other downstream 834922 24983281 ~ 24993218 (+)

Expression


Co-expression Network