tom1 (LOC107672685,LOC107583252,LOC107719328,LOC107563358,LOC107703898)


Basic Information

Item Value
gene id tom1
gene name LOC107672685,LOC107583252,LOC107719328,LOC107563358,LOC107703898
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24083986 ~ 24094610 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235833.1
TAAGAGACGGTGACGTAGTCGGTTAAGTTTGTTTCAGCTCTAGCTGATCATCAGCCCAAAGCCGAAACACTGAGCACCGGACGCGCTCGGAGGATGGAGTTTTTCACAGGAAACCCCTTTTCTACACCCGTGGGTCAACTTATAGAACATGCCACCAGTTCCTCTCTCCCGTCCGAAGACTGGAGCCTCAACATGGAGATCTGTGACATTGTCAATGAAACCGATGAAGGACCTAAAGATGCTGTCAGAGCAATCAAGAAGAAGATACTGGGAAATAGGAATTTCAAAGAGGTTATGCTGACTTTGAGCGTGTTGGAGGCCTGTGTGAAGAACTGCGGGCACAGATTCCACATCTACGTGTCCACCAGAGACTTTGTGGAGAACGTTTTAGTCCAGACGATCCTGCCTAAAAACAACGCCCCAGTGGTTCTTCAGGACAGAGTCTTGAGCATGATACAGGCGTGGTCCGATGCCTTTCGTAGTTCTCCAGATTTGACCGGAGTCGTGACTGTCTATGAGGACCTCAGGAGGAAAGGCGTGGAGTTTCCCATGACTGAACTGAATGGATGTTCCCCTATACACACTCCCAACAGGACCATCGAGTCGGCGTCTCCGGTGACGGCTCACACAGAAAGTCACTCCGTCACGTCGTCACAGCCACAGAATACAGAGACGCCCATCACACTGTCACCTcaacagatGAAAACAATGAAGACCGAACTGGAGGTGGTTCGTAATAATATATCAGTGATGTCGGACATGATGAGTCAGATGGAGCCCGCGAGTCTTGAGCCGTCAGACACAGAGCTGCTGCAGCAGCTCTACTCCATGACCAAAGATATGCAGGGCCGGATGGTGGAGCTCATACCCAGACTGAGCGATGAGAAGCTTATAGAGCAGCTACTCTGTGCCAACGACGACACGCACACCACGTTCGCACAGTATCACAGattTGAAAGACATCTCAGTAGACAAAGCAGTGCACAATCTAATTCAGCTAACACCAATCTTATTGATTTGGGAACTCCCAACCAATCAAAGGCAGCCAACGGCGCTCACAGCacaatcagccaatcagcagtcAGCGCACTGTCCAATCAGATGGCAGGACTGAGCACAAAAGCTGATGATTTAAAACTAAGTAAAAGCGGCTCTTCACAAAAAAGCAGTCCAGAATGCTCTGCAGGTCCAGAAGCTCTTGCAGCCACTCGAAGACAGCGACAGGACACCGGAGCGGATGACAGCCTAGACTCCACCTCCCTCGGCAGCTCGCCTCAGTTTCACTGGATGCTTGAAAAGGGAATGATTCCTGTCAGTCAGAGTGAGGTGATGGATGACATCGAGCAATGGCTGGACGTAGATGATGACGACGATGCTGAAGGAGTGACCAGTGAAGAGTTTGATAAGTTCTTAGCAGAACGAGCGAAAGCAGCGGAGCGTCTTCCTTCAGTGAAAGCATCGCAGCACGACCCGGGCCGTTCACAACTCTAGTTTGATTGTTCATAACTTCCAACATTTGTATTTCCGTTGATTTAACCATGTGCtcacttttaacttttatttatagtatttttggTTGATTTCTAAACCATGTAATGTCTTTATCAAACTGTACGAGTCTTGAGTTAGGTgcgggttttgttttttgcagatGTGTAAcctcatgaaatatttttttaataatttcttggGTACATTCTTCAGTAGaggtgatttttctttcatcttttaatgGAGAAAGGCTCTGTGGTGACGTATGAAGAACTTGAATCGATCTTTATTAAAGATCTTGATTTGTTGAGGTGAAATCccttgtatgtatatacactgAATATATTAGGCTGTTTTGAAGGGaggaagtgtttttttacagagaGGAATTTTGCGGGGTTGTTTTTCTCTCTAGTTTACACTTTGCTCTGGAAAGcgaaaactacaaaaaaaaaaattaattgaataagAAAAGGCCCTCGCaacttgttttttaaatgttttagaaataaaataaattcacttGAAAATTACAATGAATGTGGTTTGTCTGCAGGCTGCTGTATGTCTCTAGTATGAGTGTTAATAAGTACAACCTTATACGTTGAGgttatgttaaaatattcaataaaatgtcatttgaaaaTCTTGGA

Function

NR:

description
target of Myb protein 1-like isoform X4

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235833.1 True 2144 mRNA 0.45 17 24083986 24094610

Neighbor

gene id symbol gene type direction distance location
zgc:171844 zgc:171844,LOC107672688,LOC107719339,LOC107583313,LOC107703875 coding upstream 12142 24058693 ~ 24071844 (+)
LOC122342045 mfsd6l,LOC107719337,LOC107583315,LOC107728393,LOC107563357,LOC107703882 coding upstream 27595 24051922 ~ 24056391 (+)
mchr1b mchr1b,LOC107719342,LOC107672125,LOC107672690,LOC107602308 coding upstream 206312 23873131 ~ 23877674 (+)
trnas-aga_1 NA coding upstream 247806 23836099 ~ 23836180 (+)
il2rb il2rb,LOC107583317,LOC107695139 coding upstream 378548 23696193 ~ 23705438 (+)
LOC122342047 gcat,LOC107703894,LOC107670921 coding downstream 43933 24138543 ~ 24142121 (+)
LOC122342038 mcm5,LOC107703892,LOC107670920 coding downstream 48206 24142816 ~ 24148359 (+)
LOC122342039 foxred2,LOC107719334,LOC107559237,LOC107670923,LOC107703880 coding downstream 61746 24156356 ~ 24162242 (+)
LOC122341365 NA coding downstream 274603 24369213 ~ 24374564 (+)
gcat gcat,LOC107703894,LOC107670921 coding downstream 426418 24521028 ~ 24524600 (+)
LOC122342062 NA non-coding upstream 502 24081517 ~ 24083484 (+)
G22921 NA non-coding upstream 177729 23904175 ~ 23906257 (+)
G22865 NA non-coding upstream 191992 23891597 ~ 23891994 (+)
G22863 NA non-coding upstream 197380 23886242 ~ 23886606 (+)
G22857 NA non-coding upstream 212809 23870795 ~ 23871177 (+)
LOC122342058 NA non-coding downstream 6240 24100850 ~ 24107752 (+)
G22959 NA non-coding downstream 6250 24100860 ~ 24213281 (+)
G22963 NA non-coding downstream 22310 24116920 ~ 24120278 (+)
LOC122342068 NA non-coding downstream 27598 24122208 ~ 24123879 (+)
G22968 NA non-coding downstream 39116 24133726 ~ 24516998 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other upstream 32073 24039902 ~ 24051913 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other upstream 362267 23709503 ~ 23721719 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other upstream 652220 23424621 ~ 23431766 (+)
LOC122341907 NA other upstream 675172 23403441 ~ 23408814 (+)
LOC122341898 LOC107662363 other upstream 722044 23343964 ~ 23361942 (+)
G22958 NA other downstream 414 24095024 ~ 24097159 (+)
G22996 LOC107703883,LOC107563351,LOC107719336,LOC107583295 other downstream 339445 24434055 ~ 24439463 (+)
G22953 mfsd6l,LOC107719337,LOC107583315,LOC107563357,LOC107728393,LOC107703882 other downstream 352268 24446878 ~ 24449289 (+)
mcm5 mcm5,LOC107703892,LOC107670920,LOC107719335 other downstream 430670 24525280 ~ 24530769 (+)
G23026 LOC107559242,LOC107758098,LOC107658707,LOC107728516,LOC107695967,LOC107568243 other downstream 626916 24721526 ~ 24811577 (+)

Expression


Co-expression Network