Gene
RNA
| Item | Value |
|---|---|
| gene id | G18873 |
| gene name | NA |
| gene type | misc |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 10223879 ~ 10260714 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU21191 | False | 1824 | lncRNA | 0.44 | 2 | 10223879 | 10260714 |
| TU21190 | True | 3564 | TUCP | 0.44 | 2 | 10257112 | 10260714 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_10150798_10152858 | MIPA | coding | upstream | 70941 | 10150373 ~ 10152938 (+) |
| CI01000001_10141190_10146911 | PTGES3, PTGES3A | coding | upstream | 75821 | 10141190 ~ 10148058 (+) |
| CI01000001_10093069_10104108 | RND1B, RND1, RND1A | coding | upstream | 118180 | 10092902 ~ 10105699 (+) |
| CI01000001_10072627_10081119 | CACNB3, CACNB3A, CACNB3B | coding | upstream | 142700 | 10072627 ~ 10081179 (+) |
| CI01000001_09946111_09958162 | NA | coding | upstream | 265633 | 9944120 ~ 9958246 (+) |
| CI01000001_10321783_10325266 | NA | coding | downstream | 60933 | 10321647 ~ 10325305 (+) |
| CI01000001_10328133_10329110 | NA | coding | downstream | 67326 | 10328040 ~ 10329110 (+) |
| CI01000001_10395420_10396473 | NA | coding | downstream | 134137 | 10394851 ~ 10396705 (+) |
| CI01000001_10420931_10426716 | NA | coding | downstream | 159604 | 10420318 ~ 10427147 (+) |
| CI01000001_10525795_10530510 | WNT1 | coding | downstream | 262548 | 10523262 ~ 10530543 (+) |
| G18870 | NA | non-coding | upstream | 12433 | 10211229 ~ 10211446 (+) |
| G18864 | NA | non-coding | upstream | 14062 | 10202501 ~ 10209817 (+) |
| G18813 | NA | non-coding | upstream | 43043 | 10170951 ~ 10180836 (+) |
| G18815 | NA | non-coding | upstream | 58885 | 10159147 ~ 10164994 (+) |
| G18851 | NA | non-coding | upstream | 91126 | 10132550 ~ 10132753 (+) |
| G18874 | NA | non-coding | downstream | 24049 | 10284763 ~ 10335916 (+) |
| G18884 | NA | non-coding | downstream | 44217 | 10304931 ~ 10320075 (+) |
| G18880 | NA | non-coding | downstream | 76173 | 10336887 ~ 10338149 (+) |
| G18878 | NA | non-coding | downstream | 79323 | 10340037 ~ 10344121 (+) |
| G18876 | NA | non-coding | downstream | 129974 | 10390688 ~ 10391598 (+) |
| CI01000001_09435836_09436037 | NA | other | upstream | 785816 | 9435836 ~ 9436373 (+) |
| G17354 | NA | other | upstream | 983202 | 9234463 ~ 9240677 (+) |
| G17353 | NA | other | upstream | 995020 | 9216022 ~ 9228859 (+) |
| G17234 | NA | other | upstream | 2191396 | 8032124 ~ 8032483 (+) |
| CI01000001_07531945_07539781 | NA | other | upstream | 2683293 | 7531541 ~ 7540586 (+) |
| G18872 | NA | other | downstream | 10432 | 10271146 ~ 10281369 (+) |
| G18937 | NA | other | downstream | 214270 | 10474984 ~ 10476389 (+) |
| CI01000001_10538498_10539667 | RPS26 | other | downstream | 277758 | 10538388 ~ 10539846 (+) |
| G19039 | NA | other | downstream | 590210 | 10850924 ~ 10853983 (+) |
| G18902 | NA | non-coding | upstream | 4458 | 10252108 ~ 10252654 (+) |
| G18890 | NA | non-coding | upstream | 31584 | 10224926 ~ 10225528 (+) |
| G18896 | NA | other | upstream | 15620 | 10239900 ~ 10241492 (+) |
