asic2 (asic2,LOC107654528,LOC107674665,LOC107720021,LOC108411330,LOC107592342)


Basic Information

Item Value
gene id asic2
gene name asic2,LOC107654528,LOC107674665,LOC107720021,LOC108411330,LOC107592342
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14684646 ~ 14957726 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235846.1
TCTGCCATCTCCCCCTCTTTTCTCACTCTCTGTGTTCCCTTCCTCTCCCCTTTTTCTCGTATTTGATTCTTTCCAGCCTCCCCGTTCCTCCTTTTACCCACAATCTGCTTCTTGTATCCATCCATCACGCTCTAAGCGGAGAGGAGAGGAGTGGAGTATGAACGCACgcgggaggagaggagagaaaagCGAGCGCGAGAGGGGAAAGACGGCACAGCGTTTCGTGAAGAGCAAGGGCGAAcgagcctctctctctctctctttacctcagtttgctttttttttttacatgtgaaaGTGTGCGGGTATCTCACATCTGTATCGGCTGAGTTGTCGCTCGCGTGGATACGGCGAGGAGCGTGATGCACCGGGCGCGTGATGGTTTGGTTGGACTAGCGCGGGAAGCGCGAGACTAGAAGAAGCTGGCGTTTACACTCTCCGTCGACTCGGGATCAACGACAACATCTTCTCCAGCCCTCTCTGACccgcctccctctctctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacactcactcactcactcactcactcactcactcacacacacacacacacacacacacacacacacacacacacacactcatgtacGGCTGGATGTTGTGTCGTTTGGCTACGTGAGGTGCTAAGAATCGCCTTTGGATGTCCAGTGaccgtgtgtgtatgtgtttatgggGGATGGGATAGTTTTTAAGATTCGTACCGTTTgcgtttcatttttagttttaatttgaatagCTTTATTGGCGTGACTCTTAGGTAGCAATACTTTACTGCCAAACTTGTTTCAGAAATGTGTGCTGTTTTGCTCTGGGCATTGTCTTATCTTTTAAACAAGTGGGAGAAAGTTAGAGAGAGATTTTTAGATGTAAAAGGAGAAGCAGAGGAGGGAGATGGTGTAGAGAAGGAGGATCCTGGCATTTGGAGGGGCTGAAGTGATGGAGTGGGTGGAGAGACAGACGGAGGGAAACCCTTGGGCAGCATCTTCCACTCCATTGCCACCCTCTCACACTGCTTAACTGGAGCAAGATCTGTTCTTCCTTCActcagtgatGAGACAGTTTGGCTATGATGTCAGGGGGTGTGTGCGTGTCAGCGATGGACCTGAAGGAGGGCTGTGGAAGCGAGGCCAGCCGTGAGACCGAGAGCGGAGGCATGGGGAGCCTGGGAGGCCCCACGTCTTGGCAGTCCTTCGCCCATCGCAGCACCCTGCACGGTTTACGCTTCATCTTCCCCtactcttcctcctcctctcaccGCTCCACTTCACGCCGTCTGCTCTGGAGCGCGGCCTTGCTGGCCAGCCTGGTTCTGCTCGTCCTGGAGAGCACAGAGAGGCTGGCTTACTTCCTCTCGTACCCCCACGTCACGAGTGTGGATGCTGTGGTTTCTGGCAGCCTAGTGTTTCCCGCCGTCACCGTCTGCAATCTGAACGCCTACCGTTTCACACGTCTCACGCAGAACGACCTCTACCACGCTGGGGAACTGTTGGCCCTGCTGGACGTGCATCTGCAGATCCCTGAGCCGCACCTGGCCGAGCCCCACGTGCTGGCCTTTCTCACAGATAAATCCAACTTCACTAACTACCGGCCCAAGCCCTTCAGCATGCGGGAGTTCACTGAACGAGTGGGCCACGACCTGAAGGAGATGATGCTCTACTGCCGTTTCCAGGGCCAGGAGTGCAACCACCAAGACTTCAAAACGGTGTTTACACGTTATGGGAAGTGTTATATGTTTAACGCTGCAGAAGAAGGGAAGACTTTGAGAACTACAATGAAAGGAGGCACAGGCAACGGTCTGAGTCATGCTGACATCCAACAAGATGAATACCTGCCTGTTTGGGGAGaaacagATTCATTAGCATTTGAAAGTGGAGTCCTGATCAGTAGACCTCGCTTTGTACATGAGCTGGGCTTTGGAGTCGCCCCAGGCTTTCAGACCGTCGTTGCTGCCAGGAGCAAGAGGTGACTGACATACCTTCCTCCTCCGTGGGGCGAGTGTGTGTCCAGAGCCCTGGATTCAGGCCTCTTTCAGGTGTACAGTGTGTCTGCCTGCCGTGTTCGAAAGTGTGAGACGCGCTACATGTGAGATAACTGCAACTGCAGGATGGTCTACATGCCTGGTACGTGATTCTTCGTGTACTGCACTCCTGAACAATATAAGGACTGTGCTGAACCTGCTCTGGCTGCTCTGTCAGCTGTTGAAGGCACAAACTGCATCTGCAGGAGCCCGTGTAACATGACTCGATACAACAAAGAGCTTTCCATGGTCAAGATCCCTAGTAAAACTTCTGCACGCTATCTGGAGAAGAAGTTCAACCGGTCAGAGAAGTACATCACGGACAATATCCTTGTTCTGGATGTGTTCTTTGAGGCTTTGAATTATGAGACCATAGAGCAGAAGAAAGCATACGAGGTGGCGGGTCTACTAGGTGATATTGGTGGTCAGATGGGCTTGTTTATCGGTGCAAGTATCCTGACCATACTGGAGCTATTTGATTATGCATACGAGGTGGTGAAGGAGAGACTGCTGGACCTGCTGAAccgagaggaggaggaagagagtcATGGAGAGGATGTGAGTACCTGTGATCCGGTGGTAAACCATTCGAGTCAATTAGCCACACGGTCAGCGTTCCTCCAGACCACCCTGGGCACGCTAGAGGAGATTGCCTGCTGAGCACCGTAAACCCCTCCAGACCTACAGGGGGAGCCGGGCCACTCCACTCTAATGGGTGAAGGACAGAGTAAAACGAGGGAAAAGTCTCTGTTGCTTTTTTCCCGGCATGTCATCATTTGGCACAAACATGACAACTGGAAGCCAAGGAGCTTCTCGAGAAACACGAGGACCCCAAAGTTTCTCACAAACACCATCTGTTTGTTCCGGACTCATGAAGGAAAGCAGAAGCCCGTGGACCCGTCAGGACAGTcacttgtaaaaataaataaataaataaagacagacaTGAAAACACGAGCATGTGAGGAACTGCAGATGCGCACGGCCTCGGCATGTTCTCgcgttctctctttctctctctgcccaGCCGCCATTTTGAAGTCTACTGCCAAAACACTGTAAATTATTAACGGAGAAAATGTTGTGAAACTGTTCTAACTGTGCATGTGTCGGTTTCATGCGTTACAATGCGGTTTTCTCAAACTTGTCATCCTCTCTCACGTGTGGAGACGGTTTTGTCTTCTTGTGCTGTTCGTTTGCTATGTGTTTCTGCATCTCAATTGGCTTCTTGATGTATCAGGGATGCATCATAAAACTGAGAGCCCCTTTCTTctatcctttttatttttctatcctTCGTAGACGAGCCGAATGGGTCACGGTACAATGGCAGCCATTATGAGCCCATTCTGGCAGCGTATGGCTCTTCTACATGCTTTCTGGATCCCATTTGAAAAATGAAGAACA

Function

symbol description
asic2 Predicted to enable ligand-gated sodium channel activity. Acts upstream of or within response to steroid hormone. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gill; olfactory rosette; and ovary. Orthologous to human ASIC2 (acid sensing ion channel subunit 2).

NR:

description
acid-sensing ion channel 2 isoform X1

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG:

id description
K04828 ASIC2, ACCN1, BNAC1; acid-sensing ion channel 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235846.1 True 3477 mRNA 0.51 16 14684646 14957726

Neighbor

gene id symbol gene type direction distance location
hrob LOC107721529,LOC107654526,LOC107601306,LOC107720097 coding upstream 5781 14672317 ~ 14678865 (+)
rps11 rps11,LOC107674708,LOC107590366 coding upstream 13087 14669481 ~ 14671559 (+)
LOC122342191 NA coding upstream 13966 14670596 ~ 14670680 (+)
map3k14a LOC107654524,LOC107721479,LOC107601304,LOC107674595,LOC107590367 coding upstream 27170 14642965 ~ 14657476 (+)
gosr2 gosr2,LOC107654523,LOC107721531,LOC107674598 coding upstream 75922 14603174 ~ 14608724 (+)
kcnj19a si:dkey-106c17.3,LOC107654469,LOC107581800,LOC107737881,LOC107674737,LOC107720030,LOC108432058 coding downstream 72097 15029823 ~ 15050437 (+)
tmem98 tmem98,LOC107674611,LOC107720031,LOC107738157,LOC107654470 coding downstream 135230 15092956 ~ 15099097 (+)
zgc:100868 LOC107654462,LOC107738142,LOC107581796 coding downstream 292808 15250534 ~ 15257035 (+)
aldoaa aldoaa,aldoab,LOC107720037,LOC107674678,LOC107581735,LOC107689930 coding downstream 323002 15280728 ~ 15285025 (+)
cln3 cln3,LOC107591583,LOC107737814,LOC107720039,LOC107674677,LOC107654539,LOC107581771 coding downstream 329882 15287608 ~ 15292909 (+)
LOC122338121 NA non-coding upstream 17594 14664842 ~ 14667052 (+)
LOC122342192 NA non-coding upstream 18117 14666446 ~ 14666529 (+)
LOC122342189 NA non-coding upstream 18724 14665838 ~ 14665922 (+)
LOC122342199 NA non-coding upstream 19076 14665486 ~ 14665570 (+)
G20168 NA non-coding upstream 55330 14626792 ~ 14629316 (+)
G20183 NA non-coding downstream 13286 14971012 ~ 14971661 (+)
G20179 NA non-coding downstream 14573 14972299 ~ 14989992 (+)
G20188 NA non-coding downstream 32503 14990229 ~ 14993037 (+)
G20269 NA non-coding downstream 171955 15129681 ~ 15138900 (+)
G20415 NA non-coding downstream 629486 15587212 ~ 15588809 (+)
G20172 rps11,LOC107674708 other upstream 13078 14664919 ~ 14671568 (+)
G20167 NA other upstream 61788 14618994 ~ 14622858 (+)
G20148 LOC107721478,LOC107654521,LOC107674594 other upstream 69238 14535179 ~ 14615408 (+)
abcc1 abcc1,LOC107721490,LOC107654509,LOC107720005,LOC107688147,LOC107601224,LOC107590430 other upstream 411337 14255490 ~ 14273309 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other upstream 561518 14120185 ~ 14123128 (+)
G20286 LOC107581737,LOC107654534 other downstream 191386 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other downstream 210612 15168338 ~ 15169258 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other downstream 312074 15269800 ~ 15280113 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other downstream 749210 15706936 ~ 15744194 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 1221894 16179620 ~ 16207846 (+)

Expression


Co-expression Network