cntnap1 (cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128)


Basic Information

Item Value
gene id cntnap1
gene name cntnap1,LOC107721486,LOC107654512,LOC107720006,LOC107601289,LOC107590375,LOC107688128
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 14328206 ~ 14355988 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235861.1
TCGTGACTGTTCACCGTCTACCCAGACCGTACGACTCCACATTCCCTATGTATGTAAAAACAGAGAGTTTATGTATGCATTTCGACCAGACTGTCACAACTTTCCAAGTTTCAAGGAATTTGGTTTAATGGTAGGATGCGCGCTCCCGCCAAAGCGCAGCATCAGCACCACTATCTCGCGCGCGCCTGCCTCTAGCGAGCGAGTCTATCGCCATCCCGGCCGAGAGAGTTAAAGTTGGCCGAAAGGACGGATAAACGATGCTGTACTGTCGGGTGATGAGAAGAGGATAACATTTGATTTACTCATCTGATACAGACTCCATCTCCCGGAGAGGATGGATATCAAAATTCTTGCCCCAAGCCTTTTACTCTTTCTCGCCTTTCAGCATTGCTCGTCACGGCCATGCTTAGATCCGCTGATCTCTCCTCTCTATGCGTCTTCTTTCCATGCTTCCTCCagatataacttttattctGCACACTTTGCCAAACTGTACGGGAGCAGCGGCTGGTCTCCATCCCCTCGGGACAGGCAGCCATGGATGCAGATTGACTTGGGGAGGAAGTATCGTATCATGGCCATTGCTACTCAGGGTACCTTCAACTCTTATGATTGGGTCACCAAATACATGCTGCTGTATGGGGACCGATTTGACGCATGGACTCCATATGTCATGAAAGGAGGCAACatgACGTTGCCTGGCAACTGGAATTACTACCAGGTGAAGAGGAACGTCTTTCATTATGCGTTCACTGCCAAACATCTGCGCATCTATCCCATGGGCTGGAATACTGAGAACGGAGGAAAGATCGGCCTTCGTGTGGAGTTCTACGGCTGTCCTTACGACTCATATGTGATGCAGTTTGAGGGGGATGACATGGTGGCGTATTCATTCCCACGGGGAAGAATGAGGACACTTCAGGACCACTATGCTTTAAACTTTAAGACCTTGGAGAAGGATGGTACTCTTCTGCACAGTGAAGGTCTTCAGGGAGACTCCATCACTCTGGAGCTGAAAACTGGACGCCTCTACTTGCATATCAGCCTAGggagTAGCACTGTCCATAACACTAATGGGATGACCACAATGATGCTGGGAAACCTGCTGGACACTCAGCACTGGCACTATGTCACCATCAAGCGATACGGGCGAGAGGTTAACTTCACCTTGGACAGCCAGACTGAGACTGCTGTCCTTAACGGAGAGTTCCAGTATCTTGATCTGGACAAACAGATTTATGTTGGCGGTGTGATTGAGAAAGATGTGCCCCATCTGCCCGGTAAGGTTAACTTCCGAGGCTGCCTGGAAAACGTCTTCATCAATGGAGTCAATATCATCTACAAGACACAGTACCAGGAGCCTGAAATCCGACTCGCTCCTAAAAAGaaaaagatgcattatacTTGCCGTGATCTCCTCTGGAAGCCCATGACCTTTGCAGGACCCAACAACTACCTTCAGCTGCCTGGCTTCTTCCGGAAGAACCGCCTGGCAGTGAAGTTTAAGTTTCGCTCATGGGATTACACAGGGTTACTGATGTTCACCAGGTTTGCAGATGAGTTGGGCTCTCTGGAGCTGGGCCTCAGCGAAGGACAAGTCAACGTGACTCTAATGCAGCCTGGAAACAAGAGATTACGCTTCGCTGCAGGGTACCGTCTCAATGATGGCTTCTGGCACACAGTAGATCTGACTGCCAAAGACAACTTATTAACTATTACTATAGATGAAGATGAAAGCTCACCACTGAAGATCACCAACCCTTTCATGGTTCGTACAGGAGACCGCTACTTCTTCGGGGGTTGTCCTAAGACCAATAACACGGCTCGCTGTGTGACCAAGCTGTCTCGCTTCCATGGCTGCATGCAGCAGATCTTTATAGACGATGAGCCAGTGGATATAGATGTCATGCTGCAGAGGAAATGGGGCAGATATGCCGAAATCCTGCTGGGCACCTGCGGAATCACTGatagGTGCAGTCCAAACCCTTGTGAACATGAAGGCAGGTGTATTCAGTCCTGGAAtgacttcctgtgtgtgtgtaacaacaCGGGCTACAAGGGAGAAGTGTGTCATAACTCGGTGTACAGGGAGTCGTGCGAGGCCTACAGACTGAATGGAAAGTACTGGTCAGGCAACTACACCATAGATCCAGATCTGAGCGGACCACTGAAGCCTTTTACCGTCTACTgcaatatgtTGCAAAAATCATGGACCGTTATTGAGCACAACCGCATGAAAAGCACCAAAGTGAGCGGCTCCACCGTTGATCGACCGTACATTGGGGACCTCCAGTATGTAAATGCATCATGGGATGAAGTCACTGCCCTAGCAAACACCTCTTTATACTGTGAACAGTGGATTGATTTTTCGTGTTACAAGTCACGCCTCCTCAATACTCCACAAGGACGACCATATACTTACTGGATTGGTCGGCATAATGAGAGCCATGAATACTGGGGAGGAGCTTTCCCTGAAAGTGGGAAATGTGGAtgtgctgtcaatcaaacttGCACTGACTCCAAGTACTGGTGCAACTGTGACGCAGACTACCGCCAATGGCACTCAGATAAGGGCTACCTGTCGTTCCGAGACCACCTGCCTGTCAGAAGGATTATTATAGGAGACACTAACCGCACCGGTTCAGAAGCGCACTACAGTGTTGGGGCACTGTACTGCCATGGAGACAGGAGTATCTGGAACACTATAGCTTTCACAAAGCCCACCTACCTGGCGTTCCCCACCTTCAAGCCCGGCACCAGTGCTGATATCACATTCCACTTCAGGACCTACCGAACTAACGGAGTATTTGTGGAAACCTCAGATGACCACCTGCGCAATTTCTTACGAATTGAACTCAATTCTACAACTGAGgtggttttcattttcatggtGGGTGATGGGATTAGAAACGTGACCCTGCGCTCTCCTAAAGCTCTCAACGATAACGAATGGCACTATGTAGAAGCTGAAATCAATGTGAAGTTGGCACGTCTCAAGGTTGATTTTCTGCCTCCGGCCGTTCACAAGTTTCCAGGCCAAACCTACATCACCATGAAgttcactcaacccctgctcGTAGGGGCGGCCAATCACACCTTAAGGCCTTTTCTGGGTTGTCTGCGTGGTCTGAGGATGAACGGAGTCCCAGTGGATTTGGAGGGAAAGGTTGACGAGAGGGCTGGCATACGCAGAAACTGCACCGGAGCGTGTCTGAATGCCTCCATACCGTGTCGAAATGGAGGCCAGTGCATTGATGGCTACGCTTCATACACCTGTGACTGTAATAACACAGCCTTTGATGGCTATTACTGTCATTTAGATATCGGGGCATTCTTTGATGTGGGAGCGTGGTTGCGGTATGACATCCGCAAAGAGCCAATATCCTTTGATGCATGGTGGGCAAACTTTTGGATTGAGCCTCATTGGCACAACTTCACCCTCGGCTACAACACCACAACTGATGACATAGAGTTCAGCTTCAGCACTCTACAGGCCCCGGCGGTGCTGCTTTATATCAGCTCCTTCAGCAACGATTACATTGCCGTCCTGCTCAAGAAAGACGGGACTCTTTCGCTGAGATATCGGCTTGGGATAATAAGCTACAAATTTAAGTTGACTGACCGAAACATGGCCGACGGCTTCCCTCATTTCGTCAACATCACCAGACACAACTACACCATATGGACACAGGTGGATTACATGGATCCATGGATTGAGAAGTTAATACCAGGAGAGATTCCCAGATTCGATTCACCAAAGTCTATATTCCTGGGTAGAGTAATGGAGGTGGGAGGTGTCGACTACGAAATACAGAGACACAACAGTCCAGGTTTTATGGGCTGTATATCAGGGGTCCGATATAACATTTTTGCTCCTCTGAGGGCTTACTTCCGACCCAATGTAACCAGTCCACCGGTGACGACTCAAGGCTATGTGGTGGAGTCTAACTGTGGAGCATTTCCCCCTGTTTTAGGATATGTCCCTTGGGAGGATGACCCCTGGTTCACTGGCCTGTtCTTTTATTACATTCATGATGATGTTACCCCACCTTGGATGACACTAATCGTGACAGTGTCTCTAATGCTGCTCTTCCTCATCCTGTACGGCCTCTACATTTACCTGTACAGGTATAAAGGCAGTTACCACACTAATGAACCCAAGCAGCTGGAGTCCCCCAGCTCTGCTCGGCCCCTCACTGATACTCTGCGCAAAGATAGAAAGAACCTGCCGGAAATACAGGAGGAAAGTCCCAATGAATAACACGGACTGAGGGCTGTCTGGAGGCAAAGAGAGTAGCGCTGGTGATTTCGAGGGAGGTACATGGTGAAGACTGAGGAATGAGttgcaaatgtgattttttttgtatcttttttgcCTTTATGGTAATGTaactatgtttatttttctgtcccGTTATTTTTACAGCGTAATCTGATATTTGGTGCTTTTGGCAGGGTTCAAAATAAGCAGGCTAGAGACAATTTACCATCCGATCAATGAGCACTAGCAGTGCAGGCCGACTGAAGTGCCTCAGCAACAAGAAAAGATCGATCCAGGGTTCCCACGGTCATAGAGATATCAGGAAATATCAGGGTATTTAGTGAAAATTAATGAAATCTTTGCTCACGTTCATTTCTGTAGTCTGCAGTATAAATCATTGTAGTTATGCccatctgaaaaatattttattggttaCAAATTCACTTTTTGTGAAAACAATCTCAATAAAAAATCGTTTTCAGCATCTCTTATTTTTAATCGCAATTGGCTGGAAAACcggaaacattacaattaataaaagttttgaaaatgagaaatacCTGTAGTCAGAATAACTATTTCTAGTTATGcccataaattaaataatatactgtaataaaaatctgtataaattatacatatattttttaatttaattataaattactGGAAAATGAAGAGGTGTAAGGGTGTGGGAACCCTGTATATACTGAATGAGAGTTTTGGCTCATTGTATACTGGCAGAAGTAGTGTGTTTAATGGCCATGTTGTTGTGTTCATGAGAGAATCTGCACAAAATGCACGACAACCTTCAGAGTACAGTGTTTTGAAAGTGTAGATCTGTTTTAACATCACTGAAACTTCATTCATATATGGAGGGATTTGCTCAGTATATAAGTACTTATGTGTTTTAACTAATGTCTAAACTAGGTCCAAGCACTTATAAGAGATGAAAGGTCAATGGCAATGAATGGCTTCAGCTTCTTTAGAGCACAATGACTTTAATAATGTCTGGGATCATATTATTTCTGTGGCATATCATGAACTGCTGAAAGGTGTTTTTGTGATAGCAGCCATATTACATCTTGCTTGTGAACAGCATTATGTGGTGATTGATAAAGATTTTTGTAAAAGAGACACAGTAGGcctcatgagaaaaaaaaaaaaaaaaaaaaagcagaaggaATTTTAGCTCCATGAATGATTTCCATAGAAATCTGCGTTTTAGTGCAGTGAGTGGTGTAATGAACATGTTGTGTTGTGCTGTGTGTCTCAGGGTTGGTAACAGCGGTCATGATGGTCACGTTCTTCTCACTGCTgctacaacaacaacacaccAGCCTTTTTAAGCCGTCCTCTTGACATTTTGACTCTGAAATAAAGTTTcagattatattttacaaaccTAGCAGTACATGAACAAGGGCAGGTAAGAACTGTATTGTGTTTGAGAGCGTGTCTGATTATAATGATGCCACAGATCAGTGACTGGAGTCGAAGCTGTCTTTTCAAGAGAGTTCTTCCTGTGGGCCAAAGTAAAATGATATAGTTTTTTATAATAGAGTATAATGATATCATACTTCACAGTCCACGccatatatttatttcacacgATTGACGATGATTCCCAACAAGGATgtcaaatatgtattaaaaaaaagaattaactTAATTgatatctctttttttccagttaaTTTTGTaagggaaaaaatattttttttaatgtgtgcaagttttatatttttgtggtgtttttcGTCCATATTTCaggtttttctttaaaaaaagacatcatgAATTAGTGATGATGGGGTAATTCTGCCTTATTGATTGGCTACATAAGGAAAAAACTGTTTGGGAAACACTGTTTTAGGCAGCCTGCACTTTTCATAGTGAGGAGCTTCTGTGGGCTGAATGTGTTCACTCATAGTCGTTGAAGCCTATAATGTACATACTGATCAGAAAAAGGTGAACAAACCGTGTTAACGGTGACAGAAGATACTAAGATCTCATCTTTAGAATATCAGAGGAACAGCAAACTCAATGTGTTGTGGTGGTTTGTTACAGATCTAAGATAATCAGTTACAATCAGTTTATCAGTGGTAGATTTTGGACGGAAGTAATCATTAAAGCAGCTGATATTTTTAACATGAGGTCACATATGAAAGCTTTCTTAGCGTGAAACACTGAGCTGTTCAGCACAAGTCTATCGATGTGTGTCAAGAGGCTTTCACACATCACAGACGGTCTGTGGATGAAAGACTCGTGTATAAACTCATggtttttataaattcattcatGCGTTTGCTGTGTAGGACACCattattgctgctgctgctgctgcttcttaGCTGTTTTGATGGCGGTCTTACCAAGAGCTTAGAGCACTTCCATCGTCGTTCCAGATGTAAAATGAgctattaaaacaaaagagcaaatacGGTAGAACACATGTATTAACTTTAGGAGCTATGCATTTTGCATGACTACTGCACTTTTCATCGAAATGcaataagaaaaagaagaatCCGCTGCTTCCAGTGCCAGGCACATGTtctttagtctgtttctttaaCAGAGCCATAAGAGCTTTTATCAAAGAGATCACATAATATTCACCCACAGATTATgctgtttatgtatatgtataaataaagtgtACTTCTCTTTTTATCATtctaatttgtataaaaaaggCAGGCACGTGAAAGTATTTTGAATAGTTGAGTACTGAATGAATAAGTCCagctttttgtcttgtttttattctttttttatgtatcccTCATTCCTTTCCTCTAAACCAGTGGAATATGgactttcaatttatttttactttgaagAGTGTCTTGAATGAAGAATGAAATGCTACTGTaaagaattattaatattaaatttagcAGGGACAAACGCCTCTCAGAGTCTCTTCCTACTTgattttttctgtaaaaacgATATAGTTAGTATAAATGATTGAACACCAACACCGAAGGTTGGTGATGCTCAGACAAAAGTAAATGTTCCAGACGAATGTTAATGTGAAACGAGAAGCGAGCAGTATTTAGCACTAGCTTGTGTGATGTATGTTTGTATTAATGAGGTTTTGCGTGTCGTCTGTGTCGATGCTGCAGCTAATAGGAGAGTTACCTCATTGACATACATTTGACTGAATGTTTGAAGAAAACAACGTCACTTATGGGCACACGGAGGTCCATTTGTTTCATTTGAGGAAATGTATTACTTAATACATGACATTCACCTATGTTTTGTAGGGATTTTTTGTCCATTTGGCATTTTTCatgtacatactgtataaacacACTGATTCACTGTGAAGtattttcttcatcttttcCAAATGCACTACATATCCTGTTTGAACAAAACTGAAATCTTGTAGGCCATTTTTCTTGTGGACAAACTTTAAGAATTCCACTCTGACTGTCATGTTGGTGACAACAGTAGCTGTATGTATCTTTTGTGCAAATAGCCAACTTTGTTAACAGTGGCTATTTCACCAATTTAACCCACTTTTTCTCAGGCAGTTTATACATAgtgcaaataacatttttatttcttttatttttacacttttttgaATGGCATCTATCACTATTTGCACTGCAAACAAGTTGCTATAGCTTGTAACTTGGTGCAAAGTTATAGCATTTAATGTTATACTCATTAAGTCATTTAGTTTATCAAAgtgacatatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattaattacacgGTGGGTAATAACATCAAGTGCTAGTATGTTTCTGTAGGGTACtaatatatgttattttgaggtaaataaggtacaaagtTGTACCTTTCAGCTTTTGCCACAATGACCgctttgtacttttttttcctaagagtataatatttcactatttacggacattttggtcaaataaatgaagccttggTGAACATCAGAACTAATtccaaaacttaaaaaaatgtgtacaccccaaacctttgaatggtaaaCTGTATCTGCTGAGGTTAAATGAACATTGGGTACATTATTTGttctattatttgttattattgtgaTCACAATGATCTTTTATTACCACTGTGCTCTTGAGGTTGTTTCAGGGGAACTGTAGGTCCTGTGAATGCAAAGCATTTGCCAAAATAATTCCCATGAAAATCTCCAAGTTAAAGTCGACTAGTTTCATGGAATCGGACAAAACCTTATAATTGTATTGTCTTACAAGCAGGTAATTTCAGGTTTTTGGTCAGGTGTGACATGgtgttcattttcagttttcctAATTCTTTAGTTCTGGTTTCGTTTGTGTCATCCTCATTGTAAATGACCATGACTGTGTAGAATCAACACAAATCCCTAATGACACTTTAATAAAAGAAGCCTGAAGGAAA

Function

symbol description
cntnap1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within paranodal junction assembly. Predicted to be located in membrane; paranodal junction; and paranode region of axon. Predicted to be integral component of membrane. Is expressed in posterior lateral line nerve. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome. Orthologous to human CNTNAP1 (contactin associated protein 1).

NR:

description
PREDICTED: contactin-associated protein 1

GO: NA

KEGG:

id description
K07379 CNTNAP1; contactin associated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235861.1 True 8708 mRNA 0.42 25 14328206 14355988

Neighbor

gene id symbol gene type direction distance location
ramp2 LOC107654510,LOC107721488,LOC107601292,LOC107590449 coding downstream 18765 14303150 ~ 14309441 (-)
abcc6b.2 abcc6b.2,LOC107721491,LOC107590377,LOC107720004,LOC107688123,LOC107601225,LOC108437999 coding downstream 35263 14273386 ~ 14292943 (-)
myh11b myh11b,myh11,LOC107654508,LOC107721492,LOC107601223,LOC107590431 coding downstream 75257 14239107 ~ 14252949 (-)
mpv17l si:dkeyp-72e1.7,LOC107654467,LOC107721477,LOC107720000,LOC107590380,LOC107688122,LOC103040893,LOC108438006 coding downstream 119975 14206354 ~ 14208231 (-)
rrn3 rrn3,LOC107654503,LOC107601284,LOC107590381,LOC107688121,LOC107721468 coding downstream 126026 14195778 ~ 14202180 (-)
tubg1 tubg1,LOC107721485 coding upstream 48986 14404974 ~ 14415597 (-)
LOC122341422 LOC107654457,LOC107601299,LOC107720081,LOC107688136,LOC107721482 coding upstream 103834 14459822 ~ 14462247 (-)
LOC122341419 LOC107601299,LOC107721482,LOC107654457,LOC107688136,LOC107720081,LOC107590425 coding upstream 106259 14462247 ~ 14556085 (-)
arf2a arf2a,arf2b,LOC103045652,LOC108427419,LOC105013206,LOC107554546 coding upstream 217774 14573762 ~ 14581763 (-)
gpatch8 LOC107721478,LOC107654521,LOC107674594,LOC107601302,LOC107720016 coding upstream 254273 14610261 ~ 14641128 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding downstream 106409 14220085 ~ 14221797 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding downstream 267714 14059581 ~ 14060492 (-)
LOC122342150 NA non-coding downstream 397929 13917700 ~ 13930277 (-)
G19947 NA non-coding downstream 429274 13897631 ~ 13898932 (-)
G19872 NA non-coding downstream 694421 13633559 ~ 13633785 (-)
G20202 NA non-coding upstream 29373 14385361 ~ 14388398 (-)
G20212 NA non-coding upstream 77717 14433705 ~ 14459554 (-)
G20217 LOC107601298,LOC107721528,LOC107590427,LOC107720013,LOC107688135,LOC107654518 non-coding upstream 93487 14449475 ~ 14451028 (-)
G20231 NA non-coding upstream 247206 14603194 ~ 14604214 (-)
G20230 LOC107674595,LOC107720017,LOC107721479,LOC107601304,LOC107654524,LOC107590367 non-coding upstream 249041 14605029 ~ 14657481 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other downstream 123856 14202930 ~ 14204350 (-)
G19933 NA other downstream 522228 13805368 ~ 13805978 (-)
gng13b NA other downstream 535604 13786009 ~ 13792602 (-)
G19676 LOC107690708 other downstream 1260016 13005996 ~ 13068190 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 79159 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 764818 15120806 ~ 15179359 (-)
LOC122341947 NA other upstream 785829 15141817 ~ 15145608 (-)
atp5mf atp5j2,LOC107703422,LOC107720056,LOC107737688,LOC107591715,LOC107674607,LOC107578700 other upstream 1242782 15598770 ~ 15600348 (-)
G20680 LOC101886504,LOC101886427 other upstream 2095152 16451140 ~ 16451800 (-)

Expression


Co-expression Network