clec19a (clec19a,LOC107658453,LOC107583104,LOC107736754)


Basic Information

Item Value
gene id clec19a
gene name clec19a,LOC107658453,LOC107583104,LOC107736754
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11408037 ~ 11413269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235874.1
CCAAACACTCCACACTGTCCTGCAGCACAcatgctcacaaacacacacccacacacacacacacacacacaccagatctcaatcTCCTCTCTTGCACTAAACATGCTTTGTTGGGAATTGTGTTTAGCCGTACTGATCACCGGCTTCCCAGTGTGGGCTCTGCCTTCAACAAACATCAAGATCACACAAGCACTGCCCATGCAACTGTCAGACTCAAACCAGCCTGTGACATGTCCACTCTTCTGGACTGAATTTGAGGGCTACTGTTACCGATTCTTCCCCTTGAACCGCACATGGGCTGAGGCAGATCTGTACTGTGCCGAGTTCTCAAACGGACACAAATCTGCCAAACTCACCTCCATCCACAGCTGGGAGGAAAATGTGTTTGTCTATGATCTTGTGAACAGCCGTGTACCAGGAATTCCAACAGATATTTGGATTGGCCTTCATGATAGAAGACAAGAGGGCACTATGGAGTGGACAGACGGGTCACCCTATGAATACAGTTACTGGGACGGAAATCAACCAGATGATGGCATCCATCGCATCCCTCAGGAAGAGGATTGTGTGGAAATCTGGTACCGACAAAACAGTGCACTAAGGTCTTGGAATGACAACAATTGTGATAAGGCCTTTCCATTCGTCTGTAAGATTCCTACACTGGAAAACTAACCTCAGACCTATGATAGATTATCTAGTTCTTTATCGTCAACACTGACACCCCAACACCACTCAATCACTGCGTAGCAACAAGATGTCTGCTCATCTCCATTTCTGCAGTGATGAAGATCTCTCTTCAGGCACTTCATTTACATTTCTCTCCCCTTCACTCCTTCACAATTCCCTGTCCTCATCGTCCTCCCGTCactgttgtgtatgtgtgtatatatatatgccatagaagaaccatttttgctTTCCTAAATAACCTCTTAGTAACCAGTTCTAAAAAGCAACAGTTGTTTCTGTGgctaacattttaataatctaaatagAATCTTTCGTGGAATGGGAAGATTacataaatgtgaaatgttcgTCATGGAACCACATAATCTAATAAAGAGCTTATTTTTTAGTGTAGATAGTGACCTGCAGCATATAGCTAAACTGAACTAGAATGAAAGCTCAGGTCCCCACCCAGTCATCTGGCAATTATTTCCTTCTTTTCAGATAGGGTATGTTTGCCGGAGCCCTCCAGGATTTTATAAAAAGTCCGAAAATGTCTCttgtttttgatatttgaaGTGCATTTGTAATTTCTTGCAGACAGGAATGCGTGTGTTCATATAATGACTCCTGAGTCTTGATCTGGAACCCCAAACACTGCCAGTGTCCATCTGTGCACATTTATTTGTCACTGACCCAGGAGGTGAGATTCTAAAAGAGAAGGCATTTAAGCCTCTGTTGACTGCAGAGCTTCTAAAGACAGAAAGAGCTTAACCTCATCTAGGCAGATGACCTTTTCTCTCTATGTGTCGTGCTAATTATTAGTGACCCCCTACAAAAACCTCTATTCTCATCCACACAACTGCTAGCAAGGGTCCCAAACCCCCTTTTTCAATACATTACTTTCAATACATACTCTTTTTTCATACATTAGCTAATCTGTAATTTTAAGTATGTTGGATTGGAAGAACAGGAAGGAATTTAATATGGTACACTACAAAAGTAATTGAAACACACTGTCACAAAATAGataagtttaataataatgcaaaataagatAATTGTCACTAATTATGCTTGTTTATTTGGAATATACCTCAATATTTAGAAAACGAATTAGGCTGTTCACAAGATTccattgtttttatgcaaacGTGTTAAATAGATATCTTTTGACTATTGcgcttgtttcttttttgcattgtcTCATGCATggtaaactgctttaaaatgcgGCGATGAAATGAATagttcaacttttaaaaaatgggaAATTAAGTTCATGGACCATAAAAGtaaattcatcaaataaaagttttatacgatttaaaagttttcatttcaaacctctGCTTTAATTGCCTTTCTGGATGGAAATTTCTGGATGAAATATGTCAAGAGGAGGTAAACAAGCTAGTTTTGATGATTATCTGGCTGACCCGCGTGCACAGTGGGGTTAAGATGTTCCCCTGTTGCCGAAGAGAGTAATTAATTGACCCTCTTGTAAACCTCAGAGTAATTATCTCCCTCTTAAAGCCTGCAGAGggaacatttttacacaaacaatcctaaatcttttttttttttggtgatttaATTAGTGCCAGGGTCATCACTGCAATTGCCACACGGTTAAAACAAGTATTTCGAATGATTGATAGAGGGATAGCtcactt

Function

symbol description
clec19a Predicted to enable signaling receptor activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in heart rudiment; heart tube; lens; and solid lens vesicle. Orthologous to human CLEC19A (C-type lectin domain containing 19A).

NR:

description
C-type lectin domain family 19 member A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235874.1 True 2345 mRNA 0.40 5 11408037 11413269

Neighbor

gene id symbol gene type direction distance location
si:dkey-66i24.8 LOC107658431,LOC107583056,LOC107729444,LOC107732851 coding upstream 40922 11362983 ~ 11367115 (+)
si:dkey-66i24.7 si:dkey-66i24.7,LOC107674138,LOC107732877,LOC107658448,LOC107563999,LOC107729523 coding upstream 62103 11344269 ~ 11345934 (+)
prf1.1 prf1.1,LOC107658428,LOC107583105,LOC107729447,LOC107732857,LOC107674141,LOC107564016 coding upstream 94668 11308682 ~ 11313369 (+)
prf1.9 LOC107729509,LOC107583107,LOC107658427 coding upstream 99480 11305325 ~ 11308557 (+)
cldni LOC107729510 coding upstream 126296 11278737 ~ 11281741 (+)
LOC122341817 c1ql1,LOC107729572,LOC107658458,LOC107583048,LOC107674128,LOC103367899,LOC101070426,LOC104923905 coding downstream 84384 11497653 ~ 11515159 (+)
ccdc43 LOC107674137,LOC107729438,LOC107583050,LOC107658459,LOC107721961,LOC107564021 coding downstream 178331 11591600 ~ 11594168 (+)
fzd2 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC107721960,LOC107564008,LOC107674136 coding downstream 190405 11603674 ~ 11606177 (+)
mylk5 LOC107583040,LOC107729567,LOC107658462 coding downstream 202926 11616195 ~ 11629282 (+)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding downstream 227433 11640702 ~ 11645443 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding upstream 27247 11380273 ~ 11380790 (+)
G18982 NA non-coding upstream 32636 11371502 ~ 11375401 (+)
G18945 NA non-coding upstream 37056 11271168 ~ 11370981 (+)
G18960 paqr4a,paqr4,LOC107674132 non-coding upstream 113432 11289747 ~ 11294605 (+)
G18932 ppp1caa,pp1g,LOC105897688 non-coding upstream 136931 11270202 ~ 11271106 (+)
G19123 NA non-coding downstream 23675 11436944 ~ 11437197 (+)
G19126 NA non-coding downstream 27237 11440506 ~ 11441338 (+)
G19184 NA non-coding downstream 299340 11712609 ~ 11719579 (+)
LOC122338225 NA non-coding downstream 421503 11834772 ~ 11835253 (+)
G19208 NA non-coding downstream 554379 11967648 ~ 11974006 (+)
G18949 NA other upstream 38285 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 72212 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 565530 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 709497 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1304576 10025818 ~ 10103461 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 359931 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 472386 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 613880 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 679334 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 700779 12114048 ~ 12117939 (+)

Expression


Co-expression Network