G18890


Basic Information

Item Value
gene id G18890
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10224926 ~ 10225528 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21212
GAGCAAAAACACGCCGTTTTTGTGTGTGTCCCTTTAAATGCAAATGAGCTGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGCTCGCGCTTCGGTCGCTCAACAACAACAAAGCTGGAGAATCTCACGCAGCCAAAATGAGGATTGTCAGTAACGGTGTTTGTGAAGCAGTCCGGCGTAAAATGACGGCATGTCAACAACACTCTACTACAACAACTCTTCCTCTTCTCTAAAGCAGCCCAACATGGCCCCGCCCCCTTTGTTGTGTGTTCTCGGGGGCGGGGTTTATGTAAATTCTGAGGTTAGTGATGTCACCAACCCAGGAAGAAACTTGTTGTAGTCCCTACCAGCCATTTGTTGTAGTCCTTAAAAAGCGATTTCTGTAAAAGAAAATATCTCCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21212 True 413 lncRNA 0.48 2 10224926 10225528

Neighbor

gene id symbol gene type direction distance location
CI01000001_10150798_10152858 MIPA coding upstream 71988 10150373 ~ 10152938 (+)
CI01000001_10141190_10146911 PTGES3, PTGES3A coding upstream 76868 10141190 ~ 10148058 (+)
CI01000001_10093069_10104108 RND1B, RND1, RND1A coding upstream 119227 10092902 ~ 10105699 (+)
CI01000001_10072627_10081119 CACNB3, CACNB3A, CACNB3B coding upstream 143747 10072627 ~ 10081179 (+)
CI01000001_09946111_09958162 NA coding upstream 266680 9944120 ~ 9958246 (+)
CI01000001_10321783_10325266 NA coding downstream 96119 10321647 ~ 10325305 (+)
CI01000001_10328133_10329110 NA coding downstream 102512 10328040 ~ 10329110 (+)
CI01000001_10395420_10396473 NA coding downstream 169323 10394851 ~ 10396705 (+)
CI01000001_10420931_10426716 NA coding downstream 194790 10420318 ~ 10427147 (+)
CI01000001_10525795_10530510 WNT1 coding downstream 297734 10523262 ~ 10530543 (+)
G18870 NA non-coding upstream 13480 10211229 ~ 10211446 (+)
G18864 NA non-coding upstream 15109 10202501 ~ 10209817 (+)
G18813 NA non-coding upstream 44090 10170951 ~ 10180836 (+)
G18815 NA non-coding upstream 59932 10159147 ~ 10164994 (+)
G18851 NA non-coding upstream 92173 10132550 ~ 10132753 (+)
G18902 NA non-coding downstream 26580 10252108 ~ 10252654 (+)
G18874 NA non-coding downstream 59235 10284763 ~ 10335916 (+)
G18884 NA non-coding downstream 79403 10304931 ~ 10320075 (+)
G18880 NA non-coding downstream 111359 10336887 ~ 10338149 (+)
G18878 NA non-coding downstream 114509 10340037 ~ 10344121 (+)
CI01000001_09435836_09436037 NA other upstream 786863 9435836 ~ 9436373 (+)
G17354 NA other upstream 984249 9234463 ~ 9240677 (+)
G17353 NA other upstream 996067 9216022 ~ 9228859 (+)
G17234 NA other upstream 2192443 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 2684340 7531541 ~ 7540586 (+)
G18896 NA other downstream 14372 10239900 ~ 10241492 (+)
G18873 NA other downstream 31584 10223879 ~ 10260714 (+)
G18872 NA other downstream 45618 10271146 ~ 10281369 (+)
G18937 NA other downstream 249456 10474984 ~ 10476389 (+)

Expression


Co-expression Network