prf1.1 (prf1.1,LOC107658428,LOC107583105,LOC107729447,LOC107732857,LOC107674141,LOC107564016)


Basic Information

Item Value
gene id prf1.1
gene name prf1.1,LOC107658428,LOC107583105,LOC107729447,LOC107732857,LOC107674141,LOC107564016
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11308682 ~ 11313369 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235879.1
ACAAGCTAGCATTTATTTCCTACACCTAGCCTTATACACATCACTAACCCATGCCTGCTACACAAAACAGAGTAGTTTAAGGAAAGAAGAGCATCCGTACACCTTATCTCCATCCATTTTCCAGGAATGTGGTCCTGGCTTGTTATTTACCTCTTTCTGCCCGTTGTGCAGTCATGCACTAAAGGTAAACCGAATGAATGTGCAGAAGCAAGCTTCGCCCCCGGGTCCAACCTGGCCGGAGAAGGATACGATGTGACAAAGATGCAGCGCAAAGGAGCCTTTGTCATTAACACAGAAGTCTGGAGGCGAAAGGATAAATCATGCACTCTTTGCAAGAACCCCTACATGGATGGAGCGAATCAAAAGCTTCCTACATCTGTAGTAGATTGGAgatcaaataaaaagtgcagCGTTCAATTATCGAGTTCCCTGTATGAGTCCAGTGAAGAACTGGTCAGCTCCAGCGGCTCCTCCATTGAGAACAACTGGGGTGCAAATTTGGACAtaaatgttaaagaaaataGAGGCTCATTCATTCTGGCTGGAACTAACTCAAAGCTCGCAGAGTACTCGATGGAGAAGACCAAAAGAGACAAGTACAATTTTGCCAGTCAAAgtatttcttgttctttttaCAGCTACAGGGTCTCCAGCAGGCCTGTTCTCCATGCCGAGTTCAAACGCTCTGTGAAGGAACTTCCCAAGACATACAATCTTGATTTCAAAAAGCGTTTTTACAAGTTCATTAACACCTACGGAACCCATTACATCACCAAGGTAACTCTTGGTGGAACTGTTCACTCTGTGACCAGTATCAGACAGTGCGAGGTCGCTCTGCAGGGCTTAAGTGCAGATGAAGTGAAGACATGCTTGGACGTGGAGGCCAGTGCCAGCATTCTTGGCAAAGTAGATATGAAAGCAGAAAGTAAGCACTGTAACGAAGACAAGGAAAAAACTGAGAGCAAAAACAGCTTCTCCAGCCGCTTTAATGACAGGCTGACCGAGGTGACTGGAGGTCACACTACAGAGCCTGAGCTCCTTTTCTCAGGAGGAAAAGACCCATCAGCTTACAAAGAATGGATGGAGTCCCTACCACAAAACCCAGACATGATTTCTTACTCTCTGGAGTCCCTGCACGAGCTGATTCCCACCAAAGACCCAGCACGTAAACACTTGCGCCAAGCCATCCATGACTACATCCTGGAGAAGTCCCTCTGGAGAAACTGCACCGACTCTTGCAAAGATGGCATCAAAACCAACCAAAACAACCCGTGTGTCTGCACTTGTCACAACAATCCTGGGATCACACCAAACTGCTGCCCAACAAAGAGTGGACTTTCACGGGTAAAGGTCACAATCGTGAGGGCTCAAAACCTATGGGGTGACCAAACCACAGCGACAGATGGGTACGTTAAAGTGTTCGACAAACATAATATTCTGCGTGGAAGCACTGATATGATCACAAATAACAACTCACCCTACTGGGGGAGAACCTTTGATTTGGGTGATGTCGTCCTGGCGGAGAACGACAAGATTAAACTGGAGGTGTGGGATGAAGATAGTAAATGGGACGACGATTTGCTGGGAACCTGTGAAGTACCCATAAATTCAGGTCACAAAGAGAATTTCTGCAATTTAAATCATGGTCTGCTGTTCTACAAAACAGAAGTGACATGCGCTCCGAGTTTGTCAGGCCCCTACTGCACAAAATATGTTGGTTCCCCCATGAACTTTCACCTGGAGAAGGTATACGCATCACGTAATGCACGACCTGTGCCAGCAGACATACTGATGCGCAAGGGAGTTCTTCTGGACAGACTTTACGTATATCCAAAGACAAATTACACTGCTGAAACTATTCTGTAATCACTTTCGGCTCTGAATCTGTTTATGCAACTATTCGAAATATAACCTCAGCTGTTGTATTAATCACTATcagacatatttaatataaatctttaaTATTTCTCAACTTTAGAGACAATGCgcaatacatatttattatcttttattatctttattgcAGGATTTCTATGCTTGCACTGGcaattttccaaaaacacaaaatatgcaCTGTACTATGTTATGCTCCTTCAGTCTACACTTTGCattattcaaaacaattttcatttattcacaaGTAGAGTCACTAGGACAGCATTTTATTGCATGTGAAaataatctaaaacaaaaaatgtaatgttttgttttaataaacactttaaatggTC

Function

symbol description
prf1.1 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cytolysis. Is expressed in gill; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in several diseases, including Crohn's disease; familial hemophagocytic lymphohistiocytosis 2; human immunodeficiency virus infectious disease; multiple sclerosis; and non-Langerhans-cell histiocytosis. Orthologous to human PRF1 (perforin 1).

NR:

description
PREDICTED: perforin-1-like

GO: NA

KEGG:

id description
K07818 PRF1; perforin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235879.1 True 2231 mRNA 0.43 5 11308682 11313369

Neighbor

gene id symbol gene type direction distance location
prf1.9 LOC107729509,LOC107583107,LOC107658427 coding upstream 125 11305325 ~ 11308557 (+)
cldni LOC107729510 coding upstream 26941 11278737 ~ 11281741 (+)
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding upstream 302048 10978149 ~ 11006634 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding upstream 353953 10948678 ~ 10954729 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding upstream 423059 10874237 ~ 10885623 (+)
si:dkey-66i24.7 si:dkey-66i24.7,LOC107674138,LOC107732877,LOC107658448,LOC107563999,LOC107729523 coding downstream 30900 11344269 ~ 11345934 (+)
si:dkey-66i24.8 LOC107658431,LOC107583056,LOC107729444,LOC107732851 coding downstream 49614 11362983 ~ 11367115 (+)
clec19a clec19a,LOC107658453,LOC107583104,LOC107736754 coding downstream 94668 11408037 ~ 11413269 (+)
LOC122341817 c1ql1,LOC107729572,LOC107658458,LOC107583048,LOC107674128,LOC103367899,LOC101070426,LOC104923905 coding downstream 184284 11497653 ~ 11515159 (+)
ccdc43 LOC107674137,LOC107729438,LOC107583050,LOC107658459,LOC107721961,LOC107564021 coding downstream 278231 11591600 ~ 11594168 (+)
G18960 paqr4a,paqr4,LOC107674132 non-coding upstream 14077 11289747 ~ 11294605 (+)
G18932 ppp1caa,pp1g,LOC105897688 non-coding upstream 37576 11270202 ~ 11271106 (+)
LOC122336311 NA non-coding upstream 115687 11189556 ~ 11192995 (+)
LOC122336295 NA non-coding upstream 145775 11161878 ~ 11162907 (+)
G18982 NA non-coding downstream 58133 11371502 ~ 11375401 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding downstream 66904 11380273 ~ 11380790 (+)
G19123 NA non-coding downstream 123575 11436944 ~ 11437197 (+)
G19126 NA non-coding downstream 127137 11440506 ~ 11441338 (+)
G19184 NA non-coding downstream 399240 11712609 ~ 11719579 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 466175 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 610142 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1205221 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 1508886 9798815 ~ 9799796 (+)
G18491 NA other upstream 1558802 9739796 ~ 9749880 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 20372 11333741 ~ 11335825 (+)
G18949 NA other downstream 55524 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 459831 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 572286 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 713780 12027149 ~ 12049422 (+)

Expression


Co-expression Network