LOC122342097 (LOC107660919,LOC107567207,LOC107754572,LOC107689067,LOC107552480,LOC107735422,LOC107739406)


Basic Information

Item Value
gene id LOC122342097
gene name LOC107660919,LOC107567207,LOC107754572,LOC107689067,LOC107552480,LOC107735422,LOC107739406
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20478686 ~ 20482737 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235883.1
TTAATTAGATGTTCCACATATGAACAGGATTACAAGCTTGGATTTACAGAATTCACTTAGTGCTGTATTTTAAACACTGGACCAAAAACAAGTAGATCAATAATGACTGTAGGTGGTGTTTGCATATGTTTAGATGGTTTGCAACCCACCAGTAAATCAGGGAGGTGTCCTGTTTGGTTCACCTAGTTTTTGTCGTGGCCACGGCATATTTAACTCGTGGGGACGTGATATTATGTCTTGGCCACGAGACAAAAGGCATTTATCAAGGTAACGACATCCTTGTGTTGTGGCCTGGAGATGCTACGTTGAAGGAGCTATATCCATTTCTCCTGGAGACGAGTTTATTGCCTAAACAAACATGTGACCATTGCAACCCGGCATTATCTGAGattgattcattattattatttttttgaattaatattttttctattaattgGTATAGAAATGATTACAtcctttcttttattgttttataaaataaattattatattatgcattgcATGATATGTAAACAGCATTTGCATTAAGTTTATCATGAATAAACGTTACATAAAGTAAAGAGGCCTACAAAAAACATCTGTATCCATCTCACAGTCTTGCTAGCTATGTGTGTCCATTAACTGATCTTCTTTTGTCGTAATATTTGtatatcatcattattaaaaatgttttatccatCTCTGATAATCCCGGGTTGCTATGGTCACGTAGGTCTGTTTATAAACACGTAGCCACGAGAAAAATACGTCGttcccttaaaataaaaagtcgtGGCCACGAGAAATGGATCTTGTTTCTTCAGCATAGCATCCCGAGGCCACAACATAAGGATGTCGTTACCTCGACAAAAATATCTTGTGGCCAATATGACGATCCCACGAATTAATGGCCACGACAAAACTTCGTGAACCGAACACGACACCCCCCGGGCACCGTAGTTTTTGTACCTTCGACTCCTCTCCTTTGGTTGGCGCTGAATCACTGCTGAATCGATTTATTTCTGTGGCTAAAGAGGAACATATACATGGTCACATGACCACACAGACTTGTGTTTACATTCTGCCTTACTGTAACGTTACGCCGAAACAAAATAACCGCGAGCTAACAGCAAAATGACCAAACTGCAGGTCATCAACACCTTTCTGACGGAGCGCCTAATGGCGACGCTGAATGAAATCATGGACATGATCGGCGGGACTGTCCTGCAGTATGAAAAAGAGCTGGACAGCGTGCAGAAGGACAACGAGTATTTGAGACGCAGACTGAAGGAGATTGAGAAACTCGTCGAGTCAAACGGTCCAGCTATTTCAGACCCCGCCCCATCATCCCCACCACCGCATCTAAAGTGGACTCCCAGCATTGAAACTGAAACCATGCCAACAGAGATCTATCAGAATCAGAACCAGGTACAAACCGAACAGCTCACCAGCACGAAAGTAGAAGAGTTCTCCAACCATGCTCATCTGGTGTTGACCGAATCAGACACCGATATACCTTGTCCCCAGTTACCAAACCCACTGGCTCGTACAGACGAGGACTTTGAAACATCCTCTTTAAACGAATTTCCTTGTGGTGTAAAAACAGAGCCCTTTGAAAGTCTCGATTCACAATCCACCGCTGCTAACACATCAGGCTACAGTCCAACACCTCATTGCACTCCTCAGTTACCAGCTACTACCGATATTAACCACAAGTCTGATCCTAAAGTGTTCAGTGTATCGAATTCCACTGATCTGGAATCAGCTAAACGGATGAAGTTAAAGGCTAAAACCTTGCATGTATCCCTCAGTAAAATAAGCCAAAATGTGTTAAAGACCTCTTGTCCTGAGTCAGGTGTAGCTCACGCCAACTACAACACCGCTCATCAAAACTCAGACTCCAGATCACTTAGGAACGATGCTATTAGCGGCAACTCTCATCTCGGTATAGCTAACGTTACGATTAACCCCCTACGTCACTCGCCGTTCAGCAGAGAGATCAGGCAGTTTCGGGGAAGAGGACGGGGACGAGGAAGAGTCAAAGGTCCTGGGACGCACGTATGCCCTCAGTGTGGAAAACTCTTCCCCCATCACTCCCGGCTAAAGGTGCACATGCTCATTCACACAGGGGAGAAGCCTTACGCTTGCGCTCAGTGCGGGAAACGCTTCAACAACGACGGGACTCTGAGGAACCACAGCCGCGTGCATCTGCAGCTCCGTCTGTTTGACTGTCCTGTGTGTGCACGGAGCTTTAAAGATGCCTACACCTGTCGAAATCACATGCGTGTTCATAATAGGTGAGGCAATTGGTGATTCTGCTTCAGCAGCCAAACTGAACAGATCTTGAGCTACAGGAAAGACTCAAGGGAGGTTTTCCCTGGTGATCGTGACATGTGTTGTGCTGGATTATAGAGACATCTAAAATGTGCTATGCTGGGAGACCCCCGTGGGCAGAAAAGA

Function

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 17-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235883.1 True 2442 mRNA 0.44 2 20478686 20482737

Neighbor

gene id symbol gene type direction distance location
si:dkey-93n13.2 LOC107754579,LOC107567217,LOC107661267,LOC107689100,LOC107739413,LOC107552446 coding upstream 1453 20474185 ~ 20477233 (+)
LOC122341263 LOC107689064 coding upstream 5275 20470981 ~ 20473411 (+)
zgc:66474 LOC107754539,LOC107567164,LOC107660968 coding upstream 8840 20461375 ~ 20469846 (+)
zgc:66443 LOC107567227,LOC107754585,LOC107660992,LOC107552485,LOC107689065,LOC107739396 coding upstream 18335 20457138 ~ 20460351 (+)
LOC122342178 LOC107661000,LOC107567245,LOC798483,LOC107754527,LOC107552447 coding upstream 26696 20444908 ~ 20451990 (+)
sgf29 sgf29 coding downstream 40131 20522868 ~ 20526632 (+)
LOC122341343 spns1,LOC107552478,LOC107754623,LOC107689070,LOC107739389,LOC107660866,LOC107567150 coding downstream 45314 20528051 ~ 20541188 (+)
lat LOC107567139,LOC107755157 coding downstream 58593 20541330 ~ 20548973 (+)
LOC122341935 LOC107687002 coding downstream 91536 20574273 ~ 20577034 (+)
pitpnbl pitpnbl,LOC107754658,LOC107739385,LOC107552474,LOC107567088,LOC107689074,LOC107660806,LOC108410611,LOC103031125 coding downstream 95043 20577780 ~ 20584896 (+)
G21671 NA non-coding upstream 70359 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 84785 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 133330 20339891 ~ 20345356 (+)
G21661 NA non-coding upstream 136390 20341072 ~ 20342296 (+)
G21655 NA non-coding upstream 164542 20230015 ~ 20314144 (+)
LOC122337901 NA non-coding downstream 237836 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 240721 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 255240 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 287920 20770657 ~ 20770881 (+)
G21740 NA non-coding downstream 288387 20771124 ~ 20771524 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 282965 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 365188 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 409433 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1075510 19399408 ~ 19403176 (+)
G21213 NA other upstream 1186345 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 399461 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 812965 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1155006 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1492515 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1493772 21976509 ~ 22025911 (+)

Expression


Co-expression Network