zgc:163143 (LOC107724428,LOC107689697,LOC107601243,LOC107688084,LOC107590412)


Basic Information

Item Value
gene id zgc:163143
gene name LOC107724428,LOC107689697,LOC107601243,LOC107688084,LOC107590412
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13358939 ~ 13364611 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235890.1
CTGGACACCACAGATGTAGCCGAGCCGCTGGAgctctgttttggttttttggCGTTCAGCGTTCAGTGTGTTTGTTCGTTCGCCAGCGTTATTTTGAAATAGAATACGACGGAGCGATAGCGTTCAATAAACATACCGCTGGTAGATAAGGTGAATGTTGAGCCTCCAGACGCGATGGTGTGTCATTGTTGTGCATataactgtaaaaacactgCGAAGAACAAGAGTCTGTCGTTCCACAAatttccGCTAAAAGACCCCACTTTGCTGAAAAAGTGGCTTAAAAATTTAAGATGGAAAGACTGGAAGCCTGCACCAAACAGTAAAATCTGCTCCGTCCACTTTGAAAATAAGTGTTTTGTTGAAGACGGGAAGAGAACAAGACTTCATTCATGGGCTGTGCCCACCATCTTTTCATTCCCAAATCGATATCTAGAAAGAAAGGTTAAAATCAATCCTAGAAGCAAAAGAGCTTTGGGAATTGTTGCAGAGTCAAATTCACCTGATCAGGCAGCACCTGACGCGACGACAGAAACCTCGCAGAAACCTTACTCAGAAAAACCTGAGCACAGAACTACAGAGAGTTCACAGCCGGACACGTCCGAAAGTAGTTCTAGCCCGACCAGAACAGACCCAAAGCAGCTGATAGAACCGGAAAAAAGCCCACCGTGGACCATCCTGGGTGATGAAACTCTTGACAGAAGCATGACTTTACCCAGTTTCTTCCACAGTGGATACTGTCTGCccaataaCATCCGCTGGGCTGGAGACAATGAATTGAATATTATGCCGCATGTGGCTTATGGAGTTTTAGGACAAACGAAACCCCATATCATTGAGGTTAAAGAGAGGTGGGAATGGCTTGGGCTGGATGTTAGAGGCCCGTTCTCTCCGACAGTAGACCAGCACACGCACATCATGACCCTGATTGACTATCACTCCAAATGGGTGGAAGCTTTCCCTTTGACTCAGGATCTCAGTCAGGATGTGGCCAGGTGCCTCGCTGAAGTCGTCAGTCAGCAGGGATACCCTCTGGGAATTCTCTCCCGGCTCCCCAAGCGCATCCTCATGGAGGTTAACCGTGAATTGAAGAAAAACCTGAGGCTGAATTCAAACGCCTTAGTCATTCATCACCGTCAAACTGGTTACATGGACCTGGTCACCGAGTCGCTTCTTAATGAGATGCTGGACGAGCTGGTGAAGAAGCACGGCAGAATCTGGCACATCCTCCTCCCTGCTGCCACTCTGCGCCTCTGCTGCACCACTCACCCCACGACCAAAGAGAAAGCCTTCACCCGCATGTGTGCCAGTGACCCCCCGTTCTCATCCGCACCCAGAGAGCTGCCTTACAGTGCTACTGATGTTCGCTTGAGCTCTTTTGTCATTCCTGCTGCTGACGCCAACAATCTGGAAACAGGCTCAGAAACTTCGGCAGTGAACGTGACCGTCTGTACTCCAGTCAGGACCCGGCGCTGCAGGAGGCGCTAGAGAGCACGTACATGAAGAAACGTGAAGAAAGAAGAGGAGCTGAACGCACACGAGCAGCCGAAGTCCTCTAACTAACCAAAC
>XM_043235891.1
CTGGACACCACAGATGTAGCCGAGCCGCTGGAgctctgttttggttttttggCGTTCAGCGTTCAGTGTGTTTGTTCGTTCGCCAGCGTTATTTTGAAATAGAATACGACGGAGCGATAGCGTTCAATAAACATACCGCTGGTAGATAAGGTGAATGTTGAGCCTCCAGACGCGATGGTGTGTCATTGTTGTGCATataactgtaaaaacactgCGAAGAACAAGAGTCTGTCGTTCCACAAatttccGCTAAAAGACCCCACTTTGCTGAAAAAGTGGCTTAAAAATTTAAGATGGAAAGACTGGAAGCCTGCACCAAACAGTAAAATCTGCTCCGTCCACTTTGAAAATAAGTGTTTTGTTGAAGACGGGAAGAGAACAAGACTTCATTCATGGGCTGTGCCCACCATCTTTTCATTCCCAAATCGATATCTAGAAAGAAAGGTTAAAATCAATCCTAGAAGCAAAAGAGCTTTGGGAATTGTTGCAGAGTCAAATTCACCTGATCAGGCAGCACCTGACGCGACGACAGAAACCTCGCAGAAACCTTACTCAGAAAAACCTGAGCACAGAACTACAGAGAGTTCACAGCCGGACACGTCCGAAAGTAGTTCTAGCCCGACCAGAACAGACCCAAAGCAGCTGATAGAACCGGAAAAAAGCCCACCGTGGACCATCCTGGGTGATGAAACTCTTGACAGAAGCATGACTTTACCCAGTTTCTTCCACAGTGGATACTGTCTGCccaataaCATCCGCTGGGCTGGAGACAATGAATTGAATATTATGCCGCATGTGGCTTATGGAGTTTTAGGACAAACGAAACCCCATATCATTGAGGTTAAAGAGAGGTGGGAATGGCTTGGGCTGGATGTTAGAGGCCCGTTCTCTCCGACAGTAGACCAGCACACGCACATCATGACCCTGATTGACTATCACTCCAAATGGGTGGAAGCTTTCCCTTTGACTCAGGATCTCAGTCAGGATGTGGCCAGGTGCCTCGCTGAAGTCGTCAGTCAGCAGGGATACCCTCTGGGAATTCTCTCCCGGCTCCCCAAGCGCATCCTCATGGAGGTTAACCGTGAATTGAAGAAAAACCTGAGGCTGAATTCAAACGCCTTAGTCATTCATCACCGTCAAACTGGTTACATGGACCTGGTCACCGAGTCGCTTCTTAATGAGATGCTGGACGAGCTGGTGAAGAAGCACGGCAGAATCTGGCACATCCTCCTCCCTGCTGCCACTCTGCGCCTCTGCTGCACCACTCACCCCACGACCAAAGAGAAAGCCTTCACCCGCATGTGTGCCAGTGACCCCCCGTTCTCATCCGCACCCAGAGAGCTGCCTTACAGTGCTACTGATGTTCGCTTGAGCTCTTTTGTCATTCCTGCTGCTGACGCCAACAATCTGGAAACAGGCTCAGAAACTTCGGTGCACTCTCTGAAGGATCAGAGTTTCTCCCAGCAGAGaaactaaattttattttcGTTTTTACTTGACCTCAAAATTTCGCATTCACTTTGCAgtactgtaaaatgttaaaggaatagttcacccaaaatgttatggaatttcttttgttctggcgaacac

Function

NR:

description
PREDICTED: uncharacterized protein LOC107689697 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235890.1 False 1569 mRNA 0.49 12 13358939 13364611
XM_043235891.1 True 1593 mRNA 0.47 12 13360482 13364611

Neighbor

gene id symbol gene type direction distance location
LOC122342101 NA coding downstream 6489 13349978 ~ 13352450 (-)
sept9a sept9a,LOC107689620,LOC107601241,LOC107724438,LOC107688081 coding downstream 10233 13285376 ~ 13348706 (-)
tnrc6c1 LOC107724432,LOC107590414,LOC107601217,LOC107698663 coding downstream 131801 13173351 ~ 13227138 (-)
yipf2 yipf2,LOC107698640,LOC107601236,LOC107689625,LOC107724423 coding downstream 224301 13130936 ~ 13134638 (-)
LOC122341259 clpp,LOC107753176,LOC107590418,LOC107689627,LOC107724426,LOC107698620,LOC107601229 coding downstream 247560 13107831 ~ 13111379 (-)
thraa thraa,LOC107601247,LOC107709996,LOC107689619,LOC107688087,LOC107753060 coding upstream 34345 13398956 ~ 13411948 (-)
nsfa nsfa,LOC107601245,LOC107709994,LOC107689618,LOC107590408,LOC107688085 coding upstream 71322 13435933 ~ 13453487 (-)
psmd11a psmd11a,LOC107709998,LOC107688086,LOC107601249,LOC108442534,LOC101476208 coding upstream 89655 13454266 ~ 13460815 (-)
LOC122342172 NA coding upstream 310895 13675506 ~ 13678095 (-)
ndufab1b ndufab1,LOC107601258,LOC107654464,LOC107721527,LOC107580109,LOC107720092,LOC107688150,LOC102794063,LOC107725395 coding upstream 400621 13765232 ~ 13767068 (-)
G19811 NA non-coding downstream 1150 13357579 ~ 13357789 (-)
G19726 NA non-coding downstream 229331 13125521 ~ 13129608 (-)
G19703 ighv6-1 non-coding downstream 267787 13090671 ~ 13091152 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding downstream 278318 13080070 ~ 13080621 (-)
LOC122332187 NA non-coding downstream 286111 13072560 ~ 13072828 (-)
G19872 NA non-coding upstream 268948 13633559 ~ 13633785 (-)
G19947 NA non-coding upstream 533020 13897631 ~ 13898932 (-)
LOC122342150 NA non-coding upstream 553089 13917700 ~ 13930277 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding upstream 694970 14059581 ~ 14060492 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 855474 14220085 ~ 14221797 (-)
G19676 LOC107690708 other downstream 290749 13005996 ~ 13068190 (-)
G19700 NA other downstream 311445 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 595849 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 679139 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 1015067 12339187 ~ 12343872 (-)
gng13b NA other upstream 421398 13786009 ~ 13792602 (-)
G19933 NA other upstream 440757 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 838319 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 1070536 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 1756195 15120806 ~ 15179359 (-)

Expression


Co-expression Network