LOC122342102 (nmrk1,LOC107724440,LOC107601244,LOC107682648)


Basic Information

Item Value
gene id LOC122342102
gene name nmrk1,LOC107724440,LOC107601244,LOC107682648
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13353993 ~ 13358941 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235893.1
AACACTGTTTAAAACGTTCAGTGCTCTTGAATGTGTACCTCCCGCTGCCCAGCGAAAGTTAATATGTTCACACACGTTGAAAAAAGACCTGCGGTATTGGcttaaaatgagaaaagtaATAATAGGTATTGGAGGAATGACAAACGGAGGAAAAACCACTCTGAGTAAAAACCTCCAGGAGCTTCTGCATAACAGCCTCGTTATTTCTCAAGACAACTTTTTCAAGGATGACTCTGTGGTCCCTGCTGATGTCAATGGCTTTAAGCAATATGACACTTTGGACGCCCTGCACATGGACAGGATGATGGCAGACGTCGGCTCGTGGCTGGAGGATCCTCAGAGCTTCATGATGTCTCGTGGTCCTGCAGCGAAACCCACAGCATCTGAGTCAACCAATGTGTTTGTTCTTGTAGTGGAGGGCTTCCTCATATTTAATCATGGGCCACTTAATACATTGTTCAACAAGAGGTACTTCCTGCAGATCCCTTATGAGatatgcaaagaaagaagaagCTCACGGGTCTATGTACCTCCGGATCCACCTGGCTACTTTGATGGATATGTCTGGCCCATGtacttgaaaaacaaaaaaacgatgGAAGAAGCCGTAAACGACATTGTGTTTTTGGATGGCACGCAGAAGCGCGAGACGTTGCTCTCAACTGTTCTTGCAGACTTTCAGGAAATGCTAATGGTTACACACACATGAGTCACTTTCCAGATTTTGGGGGCCGTGATTTCCAGCAGTCGGTAGTGTTTTCTGCAAGTATATTAACATTCATCAACGTATTTCATAACATGTCTCATTTCACTTCATTAAAGTAAAGCTATGTGTCTGTCATATAAAAATCTGAAGCATGTGCGTTAATGCTCAAACTGAGTGAATTAACAGAACATATATGGTTTATAAATGATTTCACCtgacatgtatttgttttggacaagaaaaaactaacttaatagcgatatatatatactgtgacgagtcggctgcccctcccctttattgtcatcatcaccccgtcctttattcgccgcccttcaccaggctcccgacgggagtgggcgtgtctgagaggaggggcgtggtattggtcaggtctggcggcgtgtgacgaggcacagcTGAAGTGAATTGAACCTCGTCACCGCcgagcgcgcctctcctcgggagaccggtctcttcccccgtgcatgcacgctggtgtaccttttctgttaataaaaagcctctccgaggcccgacgccacgcccactgtgtctgtcgttggctcctcccgtcacaatgcatttacatgtaaaagCATATAATacgtaataatatatataatgttttgagTCTGGTAGCTAACTTAGTTTACGCAATTGCAAAGATGCGACTGGGGGTTGAATAGTGATAGAATGTTTGATGAATAAAGttgaacaatattttaatgaatgaatagttATCTCTTTGGCTTCCAgatttcaacaaaataaataattttttaaatactaggAATTGTGGGCCCTGAGTGTTCTGAGTGTTGGTGCTGTTGCCCTGTCTTTACCTATTTAACTATCGAATAAGTGGTTATCTGCTGTCTCTCAGGTTTAGTTCCAggattttaagttttagttttccACCATTTGTTCTTTCTAAAACTGAACTGGCTTTTATATAGTGgctttatgtaattttatgttAACTTTAACTTCGACATAGTCTAATTATTCTTCAGGGATTGTTTTGAATTGCCTGGATTTGACTGCTCAAAATTGACCGctcaaaaatgatttattgggGCAGCTTGTAAAAGAACAGTGTGAAGAAATAACTACATCAAAGAGCTTGGCTGCATCAAGCCACAGGCCATAGCCTTTCACTGCGACTCTCACAGTCTGCTACTGTAGACAATACACTTTCCTTGACCGAGGTTATCCCAAGAccttgaaaaaataatatgcaagaATCCGGCGTCTCTGTGTCCTGCAGAGCACGCTTTTGTGATAAGCTTAAACTGTTTTATATCTATAGAATTTATTCTAGGAAAATCAtcattatgtatttaaacattgGCTAAGATCAGTTCTCTGCCGCTGGCTGCAAAAAAAGGAAACTCTGTACCCTCGGAAGAAATCCATGCAAGCGCCCCTGGGTTCAGGGACACACTAAAATGGCTAGTGgctaaatggctaatattacCCACAATCCATTGCACTTTGGGATACAGGATACAGTCCAGAACTACAAAACTTTTTAGAAGCCACCATGTATTAGCGGTCTCTTGCCTAGAGACTTGGGTTAACAAAAAGTTTTGGAAAACAACACCTCTGGTCGTTCTGTTGGATCGTTTGGACAGTCTGATCAAATATAGCCAAGTTTTTCAATGTATCTTGCTCTGTCGAAtggcaaaaatgattttatgtagACCAGTCTGGGTTAAGGCTATGCTTTTTTCCAAAAGGATTGTACTCCCCCACGCTGACTCCTATATAACTTTGTTgctttgcaaaaaaatgaataaaatagctTCATAACCTTCTCCGGAAAGTGATTTTATTGGGAGACTCCCTAGAATGAATCTGGGCTACTTTAGCCATTATGGGtctaattttaatatgtatttggTTTTGTTAAGCCTACTTGACAACCCTCTTTCACAGCTACTTCCGGGTCATGCCACGTTGACCATCTGGATAACTAAATATCCAAATCAAATTCTGGATGCAGGCGTTTTTCAGATTTCCCATTTTCAATTTTAGTAGGAAATTGAAAATACGTTGAAGtcgttatttattttagataataatGACATGACATATATCCTTTTTTGAAtaagaaaagaacaaatgatACACGGATTCGTCTCCACCAACAGTTTTTCATTGGAACACAACACTGGATCAAATATACGGTTACACAAGTGTTTTCACTTCACTTTTACTTAGCCGTTTGCTTTTTATACCATTAGCCTACTGTGTGTATAGGAACATATTTGCAAAGACAGGCTTTTCGTTGCTGATTGTGttttaactgctttaaattcACTCAAGTGATTAGATAATAATGTGTGATATTCTAAAATACACTGATGGCGATAATGGCTTCTCTGCAGATCATCTTCTTGTTggttgttctttgttttttttactgaatatgTGAAGTGGAAATAATctttagacatttatttttattaaatgcatttgtgagTGCGTCTAAAATGTCTTATGATAGTAAAATCCTTTTACTCGCCCTCATTACAAacttctttttataaaaatgtattctgcaAAATGTCTCAGTGTTATCCCCCTCAACAGAAGTGTAATATCACCAAACCGATAGGTTAGGTCACCGATATCCTGTTTTATGTTGCGCAGAAGAAAGTGATTCATATTTGAAACAATGTGAGCATACAGTGacagaattaaacatttttaggcGTGAAAACATGTAAACTAATGTCAGATTTAGTGGCAACTTAGCACCTGATGTGCAGAAGTAAAATTACTCATAATGCTATGAAAATacttaatacattaatattcatcATCACCATAGAGGTGTTTGGTCAAATATCAAGGTGACAATATCACTATTAAGTGTCCTGCGCCTCCGGAAGGAGCTCTGGGTGTAAAT

Function

symbol description
nmrk1 Predicted to enable ribosylnicotinamide kinase activity. Predicted to be active in cytoplasm. Orthologous to several human genes including NMRK1 (nicotinamide riboside kinase 1).

NR:

description
PREDICTED: nicotinamide riboside kinase 1-like

GO:

id name namespace
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0050262 ribosylnicotinamide kinase activity molecular_function

KEGG:

id description
K10524 NRK1_2; nicotinamide/nicotinate riboside kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235893.1 True 3623 mRNA 0.40 8 13353993 13358941

Neighbor

gene id symbol gene type direction distance location
LOC122342101 NA coding downstream 1543 13349978 ~ 13352450 (-)
sept9a sept9a,LOC107689620,LOC107601241,LOC107724438,LOC107688081 coding downstream 5287 13285376 ~ 13348706 (-)
tnrc6c1 LOC107724432,LOC107590414,LOC107601217,LOC107698663 coding downstream 126855 13173351 ~ 13227138 (-)
yipf2 yipf2,LOC107698640,LOC107601236,LOC107689625,LOC107724423 coding downstream 219355 13130936 ~ 13134638 (-)
LOC122341259 clpp,LOC107753176,LOC107590418,LOC107689627,LOC107724426,LOC107698620,LOC107601229 coding downstream 242614 13107831 ~ 13111379 (-)
thraa thraa,LOC107601247,LOC107709996,LOC107689619,LOC107688087,LOC107753060 coding upstream 40015 13398956 ~ 13411948 (-)
nsfa nsfa,LOC107601245,LOC107709994,LOC107689618,LOC107590408,LOC107688085 coding upstream 76992 13435933 ~ 13453487 (-)
psmd11a psmd11a,LOC107709998,LOC107688086,LOC107601249,LOC108442534,LOC101476208 coding upstream 95325 13454266 ~ 13460815 (-)
LOC122342172 NA coding upstream 316565 13675506 ~ 13678095 (-)
ndufab1b ndufab1,LOC107601258,LOC107654464,LOC107721527,LOC107580109,LOC107720092,LOC107688150,LOC102794063,LOC107725395 coding upstream 406291 13765232 ~ 13767068 (-)
G19726 NA non-coding downstream 224385 13125521 ~ 13129608 (-)
G19703 ighv6-1 non-coding downstream 262841 13090671 ~ 13091152 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding downstream 273372 13080070 ~ 13080621 (-)
LOC122332187 NA non-coding downstream 281165 13072560 ~ 13072828 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding downstream 451083 12900781 ~ 12902910 (-)
G19872 NA non-coding upstream 274618 13633559 ~ 13633785 (-)
G19947 NA non-coding upstream 538690 13897631 ~ 13898932 (-)
LOC122342150 NA non-coding upstream 558759 13917700 ~ 13930277 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding upstream 700640 14059581 ~ 14060492 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 861144 14220085 ~ 14221797 (-)
G19676 LOC107690708 other downstream 285803 13005996 ~ 13068190 (-)
G19700 NA other downstream 306499 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 590903 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 674193 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 1010121 12339187 ~ 12343872 (-)
gng13b NA other upstream 427068 13786009 ~ 13792602 (-)
G19933 NA other upstream 446427 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 843989 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 1076206 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 1761865 15120806 ~ 15179359 (-)

Expression


Co-expression Network