rcn3 (rcn3,LOC107729515,LOC107730752,LOC107689660,LOC107583008,LOC107554106)


Basic Information

Item Value
gene id rcn3
gene name rcn3,LOC107729515,LOC107730752,LOC107689660,LOC107583008,LOC107554106
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12102942 ~ 12106684 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235898.1
AACGTTGCTGCTCCACCCACCTTTTACGTGCACTTTAAAGAAGAACAGTGCCAACGCGTACTCCTCAACTCAGGATAAACGGGTGTACTCAAGCAGAAATCACTGCAGGCTTGGGAGAATATGCAGCTGCTCTTTTTAAGGACACTTGCCCTGTTTGTTGGGGTCACAGTTGCTGTGCCTGCACAGGAGAAGCGTGTACATCATAAGCCTGACCTCAGTGACCATGCTCATGATGATGCCCATGGATACCAGTATGACCACGAGGCCTTCCTGGGCAAAGAGGAAGCCAAGAcctttgaccagctaagcccTGAGGAGAGCAAAGAGAGACTAGGAAAGATTGTGGATAGGATTGACACAGATAAGGACGGGTTCATAAGTCATGCTGAGCTTCACCACTGGATCAAGCACAGGCAGAGGAGGTACATCGAAGAGAATGTGGACAAGCACTGGAAAGAGTATGACCAGAACAAGGATGGGAAGATTGGCTGGATCGAGTACAAAAACACCACCTACGGATATTACATGGATGTAGAGTTTGATGATGTGGATGATAAGGCGAGTTACAAAGCCATGCTCACCAGAGATGAAAGACGTTTCAAGACCGCAGACCGGGATGGGGACGGTGTTGCTACCAGAGAAGAGTTCACTGCCTTTCTCCATCCAGAGGAGTTTGACCACATGAGAGGCATTGTGATACAGGAAACAATTGAAGACATTGACAAGAATGGAGATGGCAGGATTGATCTGCAGGAATACATAGGGGACATGTTTACCCCTGAAAATGGAGAGAACGAACCAGACTGGGTCACAACAGAAAAGAAACACTTTTCAGAGTTCAGAGACATGAACAAGGATGGTTTCCTTGATGCCAATGAAGTCTCTCATTGGATCCTCCCTGGAGAGGTTGACCATGCTGATAATGAGGCCCGGCATCTCATTCATGAAACTGATCAAGACAATGATGGTCGTCTCTCTATCAGTGAGATCATGGAAAAAATGGATTTCATTAAAGTCAGCACTATAACTGACTTTGGGACACTGACAGAAGCTCATGATGAACTTTAACCTCCTTATGACCACAAAAAGCCTGAATGTGtcttaaaactattaaaaaaggacaaatgtga

Function

symbol description
rcn3 Predicted to enable calcium ion binding activity. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including epidermis; head mesenchyme; hypochord; mesoderm; and pectoral fin. Orthologous to human RCN3 (reticulocalbin 3).

NR:

description
reticulocalbin-3 isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235898.1 True 1130 mRNA 0.46 8 12102942 12106684

Neighbor

gene id symbol gene type direction distance location
si:ch211-195b15.7 si:ch211-195b15.7,LOC107658491,LOC107689666,LOC107554103,LOC107730731 coding downstream 43393 12049457 ~ 12059549 (-)
prmt1 prmt1,LOC107729532,LOC107658485,LOC107689671 coding downstream 109779 11989102 ~ 11993163 (-)
brsk1b LOC107658484,LOC107548343,LOC108427376,LOC108274928 coding downstream 136994 11949110 ~ 11965948 (-)
cpt1a2b cpt1cb,LOC107730771,LOC107689673,LOC107548342,LOC106600940 coding downstream 154387 11924369 ~ 11948555 (-)
pih1d1 LOC107583023,LOC107658482,LOC107729529,LOC107730744,LOC107548339 coding downstream 195149 11901129 ~ 11907793 (-)
tspan4b tspan4b,LOC107729542,LOC107658498,LOC107554115,LOC107730770,LOC108427360,LOC107583081 coding upstream 20326 12127010 ~ 12131799 (-)
si:ch73-248e21.7 NA coding upstream 25912 12132596 ~ 12136213 (-)
si:ch73-248e21.5 NA coding upstream 30034 12136718 ~ 12140766 (-)
mylpfa mylpf,mylpfa,LOC107582990,LOC108249004,LOC108274226 coding upstream 140070 12246754 ~ 12249930 (-)
pheta2 zgc:153733,LOC107658512,LOC107729468,LOC107582989,LOC107554091,LOC107689645 coding upstream 145233 12251917 ~ 12255778 (-)
G19463 NA non-coding downstream 5580 12092899 ~ 12097362 (-)
G19453 LOC107583009,LOC107729419,LOC107658421,LOC107730751,LOC107554101,LOC107689664 non-coding downstream 16721 12085329 ~ 12086221 (-)
G19436 NA non-coding downstream 57542 12044649 ~ 12045400 (-)
G19427 NA non-coding downstream 76002 12026364 ~ 12026940 (-)
G19422 NA non-coding downstream 79515 12019583 ~ 12023427 (-)
G19503 NA non-coding upstream 75574 12182258 ~ 12182484 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding upstream 119891 12226575 ~ 12230379 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding upstream 159161 12265845 ~ 12270936 (-)
LOC122332655 NA non-coding upstream 187456 12294140 ~ 12295423 (-)
G19677 LOC107737766 non-coding upstream 757626 12864310 ~ 12886954 (-)
LOC122341756 NA other downstream 182175 11909775 ~ 11920767 (-)
G19383 NA other downstream 221983 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 374941 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 388223 11694272 ~ 11714719 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other downstream 673763 11411985 ~ 11429179 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other upstream 232503 12339187 ~ 12343872 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 516099 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 575306 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 899312 13005996 ~ 13068190 (-)
G19700 NA other upstream 940357 13047041 ~ 13047494 (-)

Expression


Co-expression Network