LOC122342107 (nosip,LOC107583007,LOC107658495,LOC107729514,LOC107730754,LOC107554107)


Basic Information

Item Value
gene id LOC122342107
gene name nosip,LOC107583007,LOC107658495,LOC107729514,LOC107730754,LOC107554107
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12098906 ~ 12102932 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235899.1
AGCGGCGTTCTCTGTGAACTTTTATTCTGAAATTTAAGACGATCCAGGAAGTGCAGCAAATGATACTTTCCGGTTCGGGAACAGGATTACAAGAGGACAAGCATGACTCGACACGGGAAAAACTGCACAGCAGGGGCCGTTTACACTTATCACGAGAAGAGGAAAGACACCGCCGCTTCTGGTTATGGGACACAAAGTGTGCGTTTGGGGAAGGATGCGATCAAAGATTTTGACTGCTGCTGTCTCTCCTTACAGCCCTGCAGAGACCCCGTCGTAACTGAAGACGGATATTTGTATGAAAAAGAAGCCATTCTGCAATACATCCTTCACCAGAAAACGGAAATCGCCAAGAAAATGAAGGCATATGAGAAGCAGAAACAGGCTCTAAAGAGTGAGGGCAAGTTGGAGTCCAAGTCtgaggagcgagagagagctgAGAAGTTCAAGCAGAGAGAGAACAACATTGTCTCCAAGCCAATCAACCCCTTTACCTCAGAGAAATCTAAGGATGAAGGAAGCCAGAATGGCTCGAGCAGCTCCTCCAGTTCTGACACGGCTTCCACCAGTTCCTCTTCATCTCTGCCCAGCTTCTGGATCCCCAGCCTCACACCAGAGGCCAAGCCCACCTTGCTTAAAAAACCTTCGAAGACAGTGTTGTGCCCCATGTCAGGGCGTCCTTTGAAGATGAGTGATTTAATTTCAGTGCGTTTCACTCCACTGGATTCCAGTCTGGACAGAGTGGCCCTCCTCACACGCCAAGACAGATATGTGTGTGAAGTAACCAAAGACACGCTTGGGAACTCCGTGCCCTGTGCAGTTCTTAGACCCTCTGGAGTCGTAGTCACTATGGAGTGTGTGGAGAAGCTCATACGGAAAGACATGATTGATCCAGTGAATGGAGACAAACTGAAAGAGAAGGACATTATAATCCTTCAGAGGGGTGGAACTGGCTTTGCAGGCTCAGGAGTGGACCTCAAAGCTAAAGAGGCCAGACCCGTTATGCAAGCATAAACAAGAGGACTGGACGACGCTTTGACCCTGTAAATATTGTCATTCATTTTgcgggactttttttttttcgtagtCCTTTTGTTGTCAGTTGTTTGGTGAGGGGTTATTGGAGTGGATGTTAAAGTAATTTCTTTTCCCTTGCCCCCAAAGATACGTTAATGTCATGTGTACACAATATACAGTAGAtgtgctttttgttgttttaaataaatcattcattttacaca

Function

symbol description
nosip Predicted to enable ubiquitin protein ligase activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human NOSIP (nitric oxide synthase interacting protein).

NR:

description
PREDICTED: nitric oxide synthase-interacting protein-like isoform X1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K13125 NOSIP; nitric oxide synthase-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235899.1 True 1238 mRNA 0.46 10 12098906 12102932

Neighbor

gene id symbol gene type direction distance location
trpm4a trpm4a,LOC107730751,LOC107689664,LOC107554101,LOC107729419,LOC107583009 coding upstream 8701 12075141 ~ 12090205 (+)
scaf1 LOC107729496,LOC107658492,LOC107583012,LOC107730764,LOC107554099 coding upstream 26756 12062091 ~ 12072150 (+)
LOC122342085 LOC107729420,LOC107730741,LOC107554113,LOC107689667 coding upstream 37376 12060131 ~ 12061530 (+)
prrg2 LOC107730734,LOC107583014,LOC107554111,LOC107729459 coding upstream 71972 12024187 ~ 12026934 (+)
rras rras,LOC107583016,LOC107729461,LOC107658490,LOC107730736,LOC107554112,LOC107689668 coding upstream 75472 12019174 ~ 12023434 (+)
bcl2l12 LOC107689657,LOC107658496,LOC107554114,LOC107583005,LOC107729416 coding downstream 17742 12120674 ~ 12127106 (+)
unc119.2 LOC107658437,LOC107689658,LOC107730769,LOC107583101,LOC107729484 coding downstream 38369 12141301 ~ 12143887 (+)
mmp25a LOC107730750,LOC107689654,LOC107729415,LOC107658423,LOC107554116 coding downstream 42179 12145111 ~ 12149131 (+)
srrm2 LOC107729482,LOC107583001,LOC107554117,LOC107689653,LOC107730748 coding downstream 46865 12149797 ~ 12158601 (+)
thoc6 thoc6,LOC107729483,LOC107583000,LOC107689651,LOC107730738 coding downstream 56250 12159182 ~ 12162641 (+)
G19257 NA non-coding upstream 24403 12074231 ~ 12074503 (+)
G19255 NA non-coding upstream 25833 12072719 ~ 12073073 (+)
G19208 NA non-coding upstream 124900 11967648 ~ 11974006 (+)
LOC122338225 NA non-coding upstream 263653 11834772 ~ 11835253 (+)
G19184 NA non-coding upstream 379327 11712609 ~ 11719579 (+)
G19263 NA non-coding downstream 15606 12118538 ~ 12118775 (+)
G19274 NA non-coding downstream 29697 12132629 ~ 12134957 (+)
G19287 NA non-coding downstream 125003 12227935 ~ 12228520 (+)
G19579 NA non-coding downstream 578326 12681258 ~ 12681565 (+)
G19575 LOC107690704 non-coding downstream 579886 12682818 ~ 12686371 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other upstream 49484 12027149 ~ 12049422 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other upstream 205250 11885655 ~ 11893656 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other upstream 264982 11773200 ~ 11833924 (+)
G18949 NA other upstream 729154 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 763081 11333741 ~ 11335825 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 11116 12114048 ~ 12117939 (+)
LOC122341822 LOC107582992,LOC107729455,LOC107554125,LOC107737756,LOC107689687 other downstream 129495 12232427 ~ 12249997 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other downstream 200432 12303364 ~ 12315046 (+)
G19326 NA other downstream 408994 12511926 ~ 12513721 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other downstream 416905 12519837 ~ 12528803 (+)

Expression


Co-expression Network