cbx2 (cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561)


Basic Information

Item Value
gene id cbx2
gene name cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3409777 ~ 3415087 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235901.1
GCGCGCGTCGCGCTCCTGCGTATCCGCCCCCTTCTGTTCCGTCCTGCTCCGCGCTCCCTCTCTGGCGCGCACACGCGCGCACGTTTAGTTCGCGGAGAATGAAATGAGAATGAGATGAGAACAGTCATGGAGGAGCTGAGCGCGGTGGGAGAGCAGGTCTTTGACGCCGAGTGTATCCTCAACAAACGCCTGCGGAAGGGCAAGCTGGAGTATCTGGTCAAGTGGAGGGGATGGTCGTCCAAGCATAACAGTTGGGAACCTCAGGAAAACCTTCTTGACCCGAGACTATTGGCTGCGTTTAACAAGAGGGAACAGGAACGGGAACTCTTGATCCGCAATAAGGGTAAACGGCCCCGTGGACGACCCAGAAAAATATTGGACACCATTCCAGTGGTATCCAAATCAAGCAGCTCGTCCTCATCGTCCTCATCTTCTGGTTCATCGTCTTCCTCATCGTCTTCCTCTTCTTCAGATGATGACGACGATGAAGACGACAACGATGACAGGAATCCAAAACCGAGCCCTCGTCCACGAGAGCACCACCCAGTCCCTCAGAAGAAAGCCCAGATTGTGGTTGCCAAACCAGATCTGCCGAAGAAGAAGCGAGGAAGGAAAGCTCTTCCTCCAGAGCTAAAGGCGCAGCGGCAGGTCAAAGGTCCGCGGAAGATGCTCAAGCCCATTTCCAGAGACTCAGAGCTCCGAGGGAGCATAAAGAAACCACTCATGCCTGCAAGCTTCACATACACCGGGTTGAACCGAAATTCTGGAAGAGAGCCGATGACACTGCAGAATAGAGGTTCTTTTACCCAGAAGAACTCTTTAAGTTCCTTAGGGCGCTCTGTCGGATCGACCTCGTCACCTACTACAGTAAGCCGACCACCACAAACCAAAACTGCTTCAGATTTCAAGCTCTCGGTCTCAGATATGAGCAGCGGAGGAGTCGATCCCAAAACACCCTCGTGCAAATCTCCAGGAGTGGCTGCATTGAATCTGCACAGCAGCAATGTACAGACATGTCCACAACTCTCTCCAAATGTCCCGAAGGCCTCGGATCAGACTCTACTTCAAAGATCAGGATCTCTCCAGAAATCCCCAACAAGCTCATTTTCTTCTCTTAAAACTCCTTCCAGCCTTCAAGCTCTCAACCTGCAGAGTGTAAACAAAATGGCGCAGGGTAATGGCACCTCCACAAACGACGGATCGTACTTGAAGGGTACCTCCAACCCCAATAGAAAAAGCTCTGGGTTTAACACAAGGCACGAGCAGAGTCCTGCACCGAATGTCCCAAGTAAGTTCCCGACCGGTCAACAAGTCCTTAAGAGTCCGCAACGAGATAAATCCAAAGCAGACGACTTGTCTGAAAGACTGGGGAAAAAGAATCAAGGTAGAGTGGACAAGATACTCACTCAGACGACAGAGGGACGAGATCAATCAGTGCAAGAGAGAACCTCTTCTAAAGATGCAGGGAAACCGAACAAGACCCTGAGCGAATTGAGCACTGGGGAAGAGGGAAGCAGCTCGGATTCTGACCACGATTCCTCATTTCCGAACAACAACCGTGACTTGGCTATCTCGGTGCAGGCGGGTCAGGACTGGAGGCCGACACGGAACCTGATTGAACACGTGTTTGTCACCGACGTCACTGCAAACCTGGTCACTGTGACGGTGAAGGAGTCACCCACCAGCGTTGGGTTTTTTAGCATCCGCAATTATTGAATGTCGACAACTGCAACTGCAGCCACTCTGTGATAATCAGGAGAAATTCCGAAGAAATCAAAGGAACTTGGTGCTTCTCCAACTTTggattttacttgttttaactCAAAATCTCACTGTTTTAGTTGGTCAGTTTTGAAGTTCTTGAGAAGATGAATACCTGATGACCTGCTCAGTCACAGGTGTTTATTATCTCAGTTATGCATAGATATTAAGCATAAGCATATGTTACAGAACAAATAATTGACTATTTGTCTTGGTTTCCACTTCAGGGACTGTTCCATGTTCTCTTAATGTTGATTCTGAGTACAGTATTAgtaaagaagaaagtcactaGATCGGAGCAAATGTATCCAAAATGTGTTAAGGCTAAATCTCAGATCACATTTTAAGGTGCCTGTTTTTAAAGCTGTCCACTTTCTGCCTGATGACTATTATAACTGAGGGTTTTTTTCCCTTCTAGTATGAATGTTGGCATCTTTTATACTACACAACagctctgtttatttattatttctcacTGGTTTTTGTTGGTAGGTGAAATgctaaaacatacagtaaagatttttttatacaaa

Function

symbol description
cbx2 Predicted to enable methylated histone binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of PRC1 complex. Predicted to be active in heterochromatin. Is expressed in several structures, including digestive system; heart; nervous system; pectoral fin bud; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in 46,XY sex reversal 5. Orthologous to human CBX2 (chromobox 2).

NR:

description
PREDICTED: chromobox protein homolog 2

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11451 CBX2; chromobox protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235901.1 True 2294 mRNA 0.48 5 3409777 3415087

Neighbor

gene id symbol gene type direction distance location
LOC122333486 LOC107695665,LOC107601563 coding upstream 2647 3401426 ~ 3407130 (+)
LOC122333469 LOC107576979,LOC107673194,LOC107716248 coding upstream 129222 3277169 ~ 3280555 (+)
LOC122341575 LOC107678271,LOC107553656 coding upstream 137411 3269593 ~ 3272366 (+)
jpt1b hn1,LOC107696352,LOC107751437,LOC107677345,LOC107751632,LOC107565162,LOC107728178 coding upstream 750831 2647489 ~ 2658946 (+)
gga3b gga3,LOC107751623,LOC107677341,LOC107751620,LOC107696338,LOC107573175 coding upstream 782657 2617272 ~ 2627120 (+)
tmem100a tmem100a,LOC107601598,LOC107710980,LOC107696362,LOC107695692,LOC107718941,LOC107567563 coding downstream 71065 3486152 ~ 3490051 (+)
tmem220 tmem220,LOC107570714,LOC107579199 coding downstream 414562 3829649 ~ 3831319 (+)
mrps7 mrps7,LOC107695700,LOC107673207,LOC107724659,LOC107579769,LOC108262546 coding downstream 460239 3875326 ~ 3877867 (+)
sstr5 sstr5,LOC107601569,LOC107695669,LOC107673199,LOC107716263 coding downstream 480181 3895268 ~ 3901449 (+)
LOC122341043 LOC107716255,LOC107673187,LOC107695671,LOC107724671 coding downstream 496922 3912009 ~ 3916436 (+)
G16549 NA non-coding upstream 30232 3379281 ~ 3379545 (+)
G16529 NA non-coding upstream 132797 3276399 ~ 3276980 (+)
G16492 LOC107696342,LOC107565150,LOC107563773,LOC107565157,LOC107579404,LOC107565149,LOC107755607,LOC107755606 non-coding upstream 707576 2699280 ~ 2702201 (+)
G16484 LOC107755608,LOC107563769,LOC107755618,LOC107565149,LOC107695670,LOC107575431 non-coding upstream 742518 2660875 ~ 2667259 (+)
G16357 NA non-coding upstream 775397 2631795 ~ 2634380 (+)
G16575 NA non-coding downstream 125329 3540416 ~ 3540798 (+)
G16576 NA non-coding downstream 125870 3540957 ~ 3541640 (+)
G16589 NA non-coding downstream 153705 3568792 ~ 3569146 (+)
G16598 LOC106601484 non-coding downstream 179590 3594677 ~ 3598203 (+)
G16604 LOC107710983,LOC107695695,LOC107696365,LOC107718935 non-coding downstream 191085 3606172 ~ 4061550 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other upstream 86723 3320820 ~ 3323054 (+)
G16530 LOC107601546 other upstream 126121 3282990 ~ 3283656 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 763021 2641146 ~ 2646756 (+)
G16347 NA other upstream 840778 2568084 ~ 2568999 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 1244084 2160346 ~ 2165693 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 94989 3510076 ~ 3526914 (+)
LOC122332297 NA other downstream 394083 3809170 ~ 3813344 (+)
G16667 NA other downstream 532536 3947623 ~ 3985611 (+)
G16672 NA other downstream 554428 3969515 ~ 4033526 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other downstream 941945 4357032 ~ 4405384 (+)

Expression


Co-expression Network