eif3d (eif3d,LOC107732884,LOC107690232,LOC107680878)


Basic Information

Item Value
gene id eif3d
gene name eif3d,LOC107732884,LOC107690232,LOC107680878
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10672523 ~ 10678681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235903.1
ttttattttacttgtgaaGTGTCGTAAAATCGGAGTGACGCGTTCCTTTACGGCACGGGCTCTCACCGCACCGTCTGGGAGTTGTCGTGCATTCTTGAATCAATAAGAATTTCTGCTCCAGTAAAGgcaatgGCAAAGTTCCACGCACCTGTGATCCAGGACAACCCATCAGGATGGGGTCCGTGTGCTGTTCCTGAGAAGTTTAAAGACATGCCCTACCAGCCTTTCAGTAAGGGAGACCGACTTGGAAAGGTAGCAGACTGGACTGGCGCAACATACCAGGATAAGAGATACACAAATAAGTACTCTTCTCAGTTTGGAGGTGGCAGTCAGTATGCTTATTTCCACGAGGAGGATGAGGCTAGCTTCCAGTTGGTGGATACTGCCAAGACTCAGAAGACTGCCTATCAGAGGAACCGTATGCGTTTTGCTCAGAGGAATCTTCGGAGAGACAAAGATCGCAGAACCTTTACTCAGTTCAACATGCAGACCCTGCCTAAGAGCGCCAAGCAGAAGGAAAGGGACCGCATGCGTTTGCAGAAGAAATTCCAGAAGCAATTTGGAGTTCGGCAGAAGTGGGATCAGAAGTCGCAGGCCCAGCTCAAACCCAGGGACTCCTCTGTGGAGGTGCGGAGTGACTGGGAGGTGAAGGAGGAGATGGACTTCCCCAGACTCATGAAAATGAGATACATGGACGTGGCCGACCCGATTGACATTGAGTGCTGCGGAGCTCTCGAGCACTACGACAAGGCTTTCGATCGCATCACCACACGCAATGAAAAGCCACTTAAGAGCATCAAGAGGATCTTCCACACTGTTACCACCACTGATGACCCAGTGATCCGCAAGCTGGCAAAAACCCAGGGCAACGTGTTTGCAACCGATGCCATCCTGGCAACTCTGATGTGCTGCACACGCTCTGTGAACTCCTGGGATATCATTGTTCAGCGTGTGGGCAACAAGCTCTTTTTTGACAAGAGGGACAACTCTGATTTCGACCTGCTTACAGTTAGCGAGACGGCGAATGAGCCTCCTCAGGACGAGGGCAGTTCCCTCAACTCCCCCCGAAACCTGGCCATGGAGGCCACCTACATCAACCACAATTTCAGCCAGCAGTGCCTCAGAATGGGAGGAGAGAGGTACAAGTTCCCCAATCCTAACCCATTTGTTGAGGAGGACATGGAGAAGAGTGAGGTGGCATCTGTTGCCTACAGGTACCGGAGGTGGAAGCTGGGGGAAGACATTGACCTCATGGTGCGCTGTGAGCATGATGGAGTGATGACTGGCGCAAATGGAGAAGTCTCTTTCGTCAATGTCAAGACACTCAATGAGTGGGACTCCAGATACTGTAATGGAGTGGACTGGAGACAGAAACTGGATTCCCAGAGAGGAGCGGTTCTGGCCACAGAGCTGAAGAACAACAGTTACAAATTGGCCCGTTGGACCTGCTGTGCCATTCTCGCGGGATCGGAGTACCTCAAATTAGGGTACGTCTCCCGTTATCATGTCAAGGACTCGTCTAGGCATGTCATTTTGGGTACGCAGCAGTTTAAACCCAACGAGTTTGCTAGCCAAATTAACCTGAGCATGGAGAATGCCTGGGGCATCCTGCGCTGCGTGATCGACATCTGTCGCAAGCTGGAGGAGGGCAAATATCTCATCCTTAAAGACCCTAATAAGCAAGTAATTAGGGTGTACAGCCTGCCTGATGGAACCTTCAGCtcggatgaagatgaagaggaggacgatgaggatgaggaagaagaTGAAGAGGATGAAGACAATTAAGGCATCATTAACTACCACAGCTCGCTTGTATGATGTGTTTCAATGCTGTCAGAGCTGAATAAAGATAATTGATTATTCA

Function

symbol description
eif3d Predicted to enable mRNA cap binding activity and translation initiation factor activity. Predicted to be involved in cap-dependent translational initiation. Predicted to act upstream of or within translation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Orthologous to human EIF3D (eukaryotic translation initiation factor 3 subunit D).

NR:

description
PREDICTED: eukaryotic translation initiation factor 3 subunit D

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03251 EIF3D; translation initiation factor 3 subunit D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235903.1 True 1867 mRNA 0.50 16 10672523 10678681

Neighbor

gene id symbol gene type direction distance location
sstr3 sstr3,LOC107690333,LOC107551151,LOC107680846,LOC107561344,LOC107732886 coding upstream 11439 10645904 ~ 10661084 (+)
rac2 rac2,LOC108276437,LOC107561353,LOC108436672,LOC107551172 coding upstream 33927 10626162 ~ 10638596 (+)
fam83fa fam83fa,LOC107690234,LOC107551173,LOC107732892,LOC107561349,LOC107680871,LOC107733829 coding upstream 54942 10607636 ~ 10617581 (+)
grap2a grap2a,LOC107690235,LOC107680873,LOC107561352,LOC107732893,LOC107733828,LOC107551143 coding upstream 65014 10595644 ~ 10607509 (+)
cacna1ia LOC107690236,LOC107733827,LOC107561340,LOC107680839 coding upstream 101296 10422746 ~ 10571227 (+)
cacng2a cacng2a,cacng2,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643,LOC108434911 coding downstream 32646 10711327 ~ 10769397 (+)
ifi35 LOC107729476,LOC107687635,LOC107551164,LOC107680855,LOC107561363,LOC107732881 coding downstream 139049 10817730 ~ 10820947 (+)
LOC122341641 LOC107729475,LOC107687632,LOC107551163 coding downstream 195556 10874237 ~ 10885623 (+)
akt1s1 akt1s1,LOC107729505,LOC107687628,LOC107551160,LOC107732888,LOC107577586,LOC107564011 coding downstream 269997 10948678 ~ 10954729 (+)
mybpc2a mybpc2,LOC107729557,LOC107687621,LOC107680879,LOC107732898 coding downstream 299468 10978149 ~ 11006634 (+)
G18763 NA non-coding upstream 7991 10663246 ~ 10664532 (+)
G18757 NA non-coding upstream 33230 10639089 ~ 10639293 (+)
G18747 NA non-coding upstream 82704 10589522 ~ 10589819 (+)
G18744 NA non-coding upstream 93379 10571819 ~ 10579144 (+)
G18671 NA non-coding upstream 370473 10273974 ~ 10302050 (+)
G18792 NA non-coding downstream 21596 10700277 ~ 10700619 (+)
G18790 si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107680847,LOC107732904 non-coding downstream 22106 10700787 ~ 10701636 (+)
G18794 NA non-coding downstream 23613 10702294 ~ 10702806 (+)
G18807 NA non-coding downstream 108674 10787355 ~ 10789666 (+)
G18817 NA non-coding downstream 133143 10811824 ~ 10812786 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 569062 10025818 ~ 10103461 (+)
hbbe1.3 LOC107596825,LOC107596828,LOC107674643,LOC107754023,LOC107587921 other upstream 872727 9798815 ~ 9799796 (+)
G18491 NA other upstream 922643 9739796 ~ 9749880 (+)
aanat2 aanat2,LOC107672440,LOC107670449,LOC107588006,LOC107596820,LOC107754039 other upstream 974608 9692949 ~ 9697915 (+)
LOC122341719 pet100,LOC107563330,LOC107672445,LOC107587949 other upstream 1486863 9184399 ~ 9185660 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other downstream 13209 10691890 ~ 10698540 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other downstream 74078 10752759 ~ 10842507 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other downstream 655060 11333741 ~ 11335825 (+)
G18949 NA other downstream 690212 11368893 ~ 11369752 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 1094519 11773200 ~ 11833924 (+)

Expression


Co-expression Network