LOC122342114 (tbl3,LOC107724722)


Basic Information

Item Value
gene id LOC122342114
gene name tbl3,LOC107724722
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25856873 ~ 25871422 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235905.1
ACGTCATATTTGTGCGACACTCGCAGGAACACATGCACCATGCGTTGAAATACAGAGGTGTATGAAGaaacatttatgcttttaataataaGTATATTGTTCGCGAGAAGTTGAAAACGTCGTGGGTTGTCATGGCTGGACGCGCGCTGTCGTTTAAATCAAATTACGCAGTCTCCAGCAAAATAGAACCATTCTATAAAGGAGGTAAAGTGCAGATAAGTCACGACGAGCAGTACATCTTGTGCACATGTGGTCCACGAGTCAACATTTTACAGATCAATACAGGAAAAATCATCCATAGTATCGAGCAGGATGATCAGGAGGACATCACCTCGTTCTCTCTGAGTCCCGACGATGAGGTGCTGGTGACGGCCAGCAGGGCTCTGCTCCTGAAGCAGTGGGACTGGAAGCAGGAGAAGTGCACTCGCTCCTGGAGGGCCATCCACAATGTGCCCGTGTCCAGCATGACCTTTGACTCCACCTCCACCCTGCTGGCTACAGGTGGCTGCGACGGCACCATCAAGCTGTGGGATGTTTTGAAGCAGTACTGCACACACAACCTGAAAGGATCGTCTGGGGTTGTACATTTGGTTGAGTTTCATCCGGACATCAGCAGGCTGCAGCTCTTCTCCTCCTCCGTGGACTGTGGGATCAGGATCTGGGACCTGCAGAGCAGCAAGTGTATCTGTGTTTTGGAGAGCCACTTTAGTGCCGTCACATCCCTGGCCTTCTCCCCCGACGGCGAAACTCTAATTAGTTCGGGCCGAGACAAAATCTGTTCAGTTTGGGACCTGAAGAAGAAGACCGTCAAGAAGACTGTCCTCGCCTATGAGGCTGTGGAAGGTGTTGTTCTTCTCCCTGAGAAGGGCGATTACTCTCAGATGGGTGTGAAGGGTGAAGGGTTGCACTTTGTCACAGCTGGCAGTAAAGGTATTCTTCGAGTGTGGGACTCCCTGTCCGCTCGCTGCGTGTTCATCCAATCGCTGCCCGATGCTCCGGCTCTCAACACAGACGAGGGTCATTTAGACCCGCGCAGCCTGATGCACCTCCTGCCCATGCCGCAGTCCAACAGACTGGTCAGCGTCACCGCAGAGCACAACATCCTCATCTACCAGATGCCCGCTCTCGCTGTACAGCAGCAGTTTGTCGGCTACAATGACGATGTCCTGGATGTGAAGTTCCTGGGCAGGGATGACACGCACATAGTTGTGGCCACTAACAGCTCTCAGCTGAAGGTGTTTGAGCTGGCCACTAACAGCTGTCAGATTCTGTATGGACACACAGATACCATCTTATCTATCGATGTCCTCCGCAAAGGTTCCATGTTTGCCAGCTGCGCAAAGGACAAGTCCCTGCGGCTGTGGAAGATGGATCTGACGAGCGGCCGGGTGCACTGCGTGGCTCAGGGCAGCGGACACTCCAACGCCGTGGGCTCTATCGCCTGCTCCAGGTTAAAGAAGGTCTTCCTGGTGTCGGGCAGTCAGGACTGTACTGTTAAGGTCTGGGACCTGCCTGACTCTTTTCCTGAAGTGGGATGTGAACCGGTGTTGATGACGGCACGGCTCGTAGAGAAAGCTCATGACAAGGATGTGAACAGCGTGACCGTCTCTCCCAATGACAAGCTGCTGGCCACGGGCTCTCAGGACCGTACGGCTAAGCTCTGGTTGCTGGCTGACATGAGTCTGCTGGGCGTCTTCAGAGGTCACAGTCGAGGTATTTGGTGCGTTCAGTTCTCTCCGGTGGACCAGGTCCTCGCCTCGGCCTCAGCGGACGGCTCCATCAAAATCTGGTCCCTTCAAGACTTCAGCTGCCTCAAGACGTTTGAGGGACATGACGCCTCTGTGTTAAAGGTCATATTTGTCAGTCGAGGAACTCAGCTAGTGTCGAGTGGTTCTGATGGACTTGTGAAGTTGTGGACCATAAAAACAAACGagtgcataaaaacatttgacGCCCACCAGGACAAAGTGTGGGCTCTGCACGGCAGCAGCAAAGATGACCTGATAGTGACGGGATCAGCCGACTCCACCATCACGCTGTGGAAGGACGTGACTAAAGTGGAGCTGGCAGAGGAGCAGGCCAAACAGGAAGACCGAGTCCTTAAGCAGCAGGAGCTGTCAAATTTACTTCATGAGAAGAAGTACCTGAAGGCTCTGGGAATCGCCATCTCCCTGGATCATCCTCACACTGCATTACGAGTCATCCGAGAGATACGTCAGCAGGAGGATGGCGTGCAGGAGCTAGAAAAGACCCTCCTGAAGCTCCGTCAGGATCAGAAAGAGTCGGTGTTGCGATACTCCGTGGTGTGGAACACTAATTCCCGCAGCTGTCTGGACGCCCAGGCTGTCCTGCAGGTGCTGCTCACACACCTGAGCCCAGAAGAGATCCTGCAGTATCAGGGCGCTCGCACCCATCTCGAGGGCCTCGTACCGTACACAGAGAGACACATGCAGCGGATTGGCCGTCTCCTGCAGTCCTCGATGTTTCTGGACTACATGTGGCAGAAAATGCGTATAACGGGGGGTAAAagTGTGAACttggatgatgatgaagatgagatGGACACCAGCCCTCAAACCTTCTTCATCATAGACAAGCAGCAGATGGACAAGGCAGACATTCAGGGATCTCTGCAGCAACaagatgaagaagatgaagaggaggatcTGGAGGATTCAGATAAAAGAGAGGAGCTTCTTGAAGATGAAAGTGTCAGCACATCTAAAAGCGCTCGCGTGAACGGCGTGAAACCGAGCGGCATGAACGCTGTCACAGATGGAGGTCAGGCGTCCAGTGAGGAGAgtgaagatgaggatgatgCCATAGAAATTAACGAGTCTCTTCCCACCGAATCTATGGGTTCAGAGCCCTCCAAAACTGCAGATATAAGGTGATTGGCTGCTGTAGCTGTCagttatgatttttattatttttttattcagtactgATTGTTGAATTGATGGACTATTTGAGATCTTTCAGAATTTTCTGTGATGCATCAACACAGCGTCTCTTTCA

Function

symbol description
tbl3 Predicted to enable U3 snoRNA binding activity. Acts upstream of or within lymphocyte differentiation; regulation of cell cycle process; and thymus development. Predicted to be part of 90S preribosome. Predicted to be active in nucleolus. Is expressed in several structures, including brain; eye; fin bud; gut; and hematopoietic stem cell. Orthologous to human TBL3 (transducin beta like 3).

NR:

description
PREDICTED: transducin beta-like protein 3 isoform X1

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0006364 rRNA processing biological_process
GO:0048538 thymus development biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14555 UTP13, TBL3; U3 small nucleolar RNA-associated protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235905.1 True 3018 mRNA 0.52 24 25856873 25871422

Neighbor

gene id symbol gene type direction distance location
LOC122342152 NA coding upstream 6254 25849558 ~ 25850619 (+)
LOC122341789 NA coding upstream 11125 25844687 ~ 25845748 (+)
LOC122332877 NA coding upstream 16272 25837186 ~ 25840601 (+)
LOC122341871 rcvrna,LOC107690016,LOC107555668,LOC107755173,LOC107583783,LOC107725264 coding upstream 134127 25720847 ~ 25722746 (+)
LOC122341380 NA coding upstream 149726 25706651 ~ 25707147 (+)
noxo1a noxo1,LOC107690034,LOC107724744,LOC107559526,LOC107691242,LOC107713950 coding downstream 88091 25959513 ~ 25963209 (+)
LOC122341386 NA coding downstream 114856 25986278 ~ 25988109 (+)
LOC122341388 tom1l2 coding downstream 152795 26024217 ~ 26038893 (+)
srebf1 srebf1,LOC107691218,LOC107713935 coding downstream 170391 26041813 ~ 26058332 (+)
LOC122341389 NA coding downstream 486834 26358256 ~ 26358813 (+)
G23152 NA non-coding upstream 3630 25847109 ~ 25853243 (+)
G23151 NA non-coding upstream 21732 25834383 ~ 25835141 (+)
G23149 NA non-coding upstream 26429 25828964 ~ 25830444 (+)
G23142 NA non-coding upstream 69850 25779416 ~ 25787023 (+)
G23139 NA non-coding upstream 81726 25769381 ~ 25775147 (+)
G23160 NA non-coding downstream 2892 25874314 ~ 25877151 (+)
G23170 NA non-coding downstream 75664 25947086 ~ 25947832 (+)
G23176 NA non-coding downstream 187930 26059352 ~ 26072689 (+)
G23189 NA non-coding downstream 260180 26131602 ~ 26133830 (+)
G23508 NA non-coding downstream 307810 26179232 ~ 26191842 (+)
G23146 NA other upstream 6297 25837143 ~ 25850576 (+)
LOC122341783 arl16,LOC107583744 other upstream 22675 25832505 ~ 25834198 (+)
G23121 rsad1,LOC107755174,LOC107690008,LOC107670671 other upstream 194556 25661048 ~ 25662317 (+)
LOC122336634 NA other upstream 240968 25613159 ~ 25615905 (+)
LOC122331665 rsad1,LOC107690008,LOC107755174 other upstream 279830 25573757 ~ 25577043 (+)
LOC122341383 tom1l2 other downstream 23168 25894590 ~ 25911625 (+)
LOC122341778 gid4,LOC107724729,LOC107555661,LOC107713949,LOC107559524,LOC106601817,LOC101065567 other downstream 76632 25948054 ~ 25952747 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other downstream 779407 26650829 ~ 26705731 (+)
ubald2 ubald2,LOC107548684 other downstream 887641 26759063 ~ 26772903 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other downstream 927009 26798431 ~ 26801401 (+)

Expression


Co-expression Network