nsmce1 (nsmce1)



Basic Information


Item Value
gene id nsmce1
gene name nsmce1
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 17113048 ~ 17117041 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043235912.1
ACAATTTGTGTTTAATACAAACCTATTTCTACCAGGCTACGATGTCGGACTTTGACTGCTCGGACAAACGCACGTTATTTTGATGTAATGTGTCGCATTGAGGATGTTGTGCAAGCTCGCGGCTTGcagtattttttgtacatttgtccGGTAATACAAGCGCAAGATTGAACGTACGCTGCAAAACATCGAGGGTGATTTACTTGAAAGAAGCCGGGAAACAGTTTTCGCCCAGAAGAGTTCTAGTGAAGTTCACAAAAGCTCGAAAGGACTCTAAGCAGCATGTCCAGACCAATGGGGGACAGTCACAAGCGCTTCTTGCAGACCATAATGAGCAACGGCATCATCAGTGCATCTCAGGCTGTAGCATTACACAAACACTGCTGTGAGACCCATGGAGCACATTATACAGACAGGTTGGATGATTTCATTAATGTCATCAACACCCAACTTCAGCCCCTTTTCATGCACATCAGGAAAGGCATGTCTGAAGAGGATGGTCTTGAGTATTACGCCTTGGTAAATGTGACAGAGACGGACATAACAAGAATGACATCTGATTACGCAGATAATGAACTGGAGTTATTCAGAAAAACgATGGATCTGATTGTAGACTCTGAGAGCGGCACTGCCTCCTCCACCGATATATTAAATTCTGCCGACAGCCTACGGACAAAGAagctgaagaaaaaagaaacggAGCTTGTCTTGAACAAATTTGTCCAGGACAAATGGTTAAAGGAGAAAGATGGTGAATACACTCTAAGCGTGCGTTGCATTGTGGAGATGGAGCAGTATATGCGCACAATCTACCAAGACCTCATCAAAGTGTGTCATGTGTGCCGCAACATTGCCCTGCAGtgccagaTGTGTGAAACCCCAGCCTGTGGAATCAAGATGCACCTCCCGTGTGTCGCTCGATATTTTCGAGCACGCAGTGATCCTCGCTGTCCGGCATGCAGTGATTTCTGGCCTCACGAGATTCCAGaaaTGCCGCATACCCAGTCACAGAGTTCACAAAATCTGCCTTCATCATCCAAAGAGAACACCGCTCCCACGCAGTCACGCCGCTCAAGAAGGCTGTGATCTCAAAGCCTGCTGATTCATCGCTGCAGCTGACCTTTTGACCATTAATGAGTTGGTTTTTTTAGTTCATTCTCTTAgaagtttaaaagtttttttacatatattttcttaaaaaataactgTTGTTTCTCAAATGCGCATTATGTTTGTTGGAATTCTGATTTAtgatccaaaaatgaacattttgtagTTGCtcagataaaaatacaaaataaaaattgagaCGCA
>XM_043235913.1
GCTTCTGAATGGACCAGACCACGTGACCGGAAGTGCTGTTTCAAGAGGGAAGTGACAGCTCGGCGCTATATTGAAAGCAGCTCGAAAGGACTCTAAGCAGCATGTCCAGACCAATGGGGGACAGTCACAAGCGCTTCTTGCAGACCATAATGAGCAACGGCATCATCAGTGCATCTCAGGCTGTAGCATTACACAAACACTGCTGTGAGACCCATGGAGCACATTATACAGACAGGTTGGATGATTTCATTAATGTCATCAACACCCAACTTCAGCCCCTTTTCATGCACATCAGGAAAGGCATGTCTGAAGAGGATGGTCTTGAGTATTACGCCTTGGTAAATGTGACAGAGACGGACATAACAAGAATGACATCTGATTACGCAGATAATGAACTGGAGTTATTCAGAAAAACgATGGATCTGATTGTAGACTCTGAGAGCGGCACTGCCTCCTCCACCGATATATTAAATTCTGCCGACAGCCTACGGACAAAGAagctgaagaaaaaagaaacggAGCTTGTCTTGAACAAATTTGTCCAGGACAAATGGTTAAAGGAGAAAGATGGTGAATACACTCTAAGCGTGCGTTGCATTGTGGAGATGGAGCAGTATATGCGCACAATCTACCAAGACCTCATCAAAGTGTGTCATGTGTGCCGCAACATTGCCCTGCAGtgccagaTGTGTGAAACCCCAGCCTGTGGAATCAAGATGCACCTCCCGTGTGTCGCTCGATATTTTCGAGCACGCAGTGATCCTCGCTGTCCGGCATGCAGTGATTTCTGGCCTCACGAGATTCCAGaaaTGCCGCATACCCAGTCACAGAGTTCACAAAATCTGCCTTCATCATCCAAAGAGAACACCGCTCCCACGCAGTCACGCCGCTCAAGAAGGCTGTGATCTCAAAGCCTGCTGATTCATCGCTGCAGCTGACCTTTTGACCATTAATGAGTTGGTTTTTTTAGTTCATTCTCTTAgaagtttaaaagtttttttacatatattttcttaaaaaataactgTTGTTTCTCAAATGCGCATTATGTTTGTTGGAATTCTGATTTAtgatccaaaaatgaacattttgtagTTGCtcagataaaaatacaaaataaaaattgagaCGCA
>XR_006250523.1
ACAATTTGTGTTTAATACAAACCTATTTCTACCAGGCTACGATGTCGGACTTTGACTGCTCGGACAAACGCACGTTATTTTGATGTAATGTGTCGCATTGAGGATGTTGTGCAAGCTCGCGGCTTGcagtattttttgtacatttgtccGGTAATACAAGCGCAAGATTGAACGTACGCTGCAAAACATCGAGGGTGATTTACTTGAAAGAAGCCGGGAAACAGTTTTCGCCCAGAAGAGTTCTAGTGAAGTTCACAAAAGCTCGAAAGGACTCTAAGCAGCATGTCCAGACCAATGGGGGACAGTCACAAGCGCTTCTTGCAGACCATAATGAGCAACGGCATCATCAGTGCATCTCAGGCTGTAGCATTACACAAACACTGCTGTGAGACCCATGGAGCACATTATACAGACAGGTTGGATGATTTCATTAATGTCATCAACACCCAACTTCAGCCCCTTTTCATGCACATCAGGAAAGGCATGTCTGAAGAGGATGGTCTTGAGTATTACGCCTTGGTAAATGTGACAGAGACGGACATAACAAGAATGACATCTGATTACGCAGATAATGAACTGGAGTTATTCAGAAAAACgATGGATCTGATTGTAGACTCTGAGAGCGGCACTGCCTCCTCCACCGATATATTAAATTCTGCCGACAGCCTACGGACAAAGAagctgaagaaaaaagaaacggAGCTTGTCTTGAACAAATTTGTCCAGGACAAATGGTTAAAGGAGAAAGATGGTGAATACACTCTAAGCGTGCGTTGCATTGTGGAGATGGAGCAGTATATGCGCACAATCTACCAAGACCTCATCAAAGTGTGTCATGTGTGCCGCAACATTGCCCTGCAGtgccagaTGTGTGAAACCCCAGCCTGTGGAATCAAGATGCACCTCCCGTGTGTCGCTCGATATTTTCGAGCACGCAGTGATCCTCGCTGTCCGGCATGCAGTGATTTCTGGCCTCACGAGATTCCAGaaaTGCCGCATACCCAGTCACAGAGTTCACAAAATCTGCCTTCATCATCCAAAGAGAACACCGCTCCCACGCAGTCACGCCGCTCAAGAAGGCTGTGATCTCAAAGCCTGCTGATTCATCGCTGCAGCTGACCTTTTGACCATTAATGAGACCACCAAAAACTGACAGAGAAGCTGAGCTCTAGAGAGCGCACATAATGCCAGTGCTGTCGAGGGATGAAGAGGACATCTCTGGGACGGAGAACACACTCCTGATATGAGGCTTTGGAGAAGTCTGGGAACGTCAC

Function


symbol description
nsmce1 Predicted to enable protein dimerization activity and ubiquitin protein ligase activity. Predicted to be involved in double-strand break repair via homologous recombination; positive regulation of response to DNA damage stimulus; and postreplication repair. Predicted to act upstream of or within DNA recombination and DNA repair. Predicted to be located in chromosome, telomeric region. Predicted to be part of Smc5-Smc6 complex. Predicted to be active in nucleus. Orthologous to human NSMCE1 (NSE1 homolog, SMC5-SMC6 complex component).

NR:

description
non-structural maintenance of chromosomes element 1 homolog

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:2001022 positive regulation of response to DNA damage stimulus biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006281 DNA repair biological_process
GO:0000781 chromosome, telomeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0030915 Smc5-Smc6 complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K22817 NSMCE1, NSE1; non-structural maintenance of chromosomes element 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043235912.1 True 1314 mRNA 0.43 8 17113152 17116319
XM_043235913.1 False 1133 mRNA 0.44 8 17113048 17116319
XR_006250523.1 False 1274 transcript 0.47 9 17113152 17117041
Loading

Neighbor


gene id symbol gene type direction distance location
LOC122341850 LOC107727127,LOC107674682,LOC107745580,LOC799265,LOC108433148,LOC105013234 coding upstream 15083 17089814 ~ 17097965 (+)
litaf litaf,LOC107727125,LOC107703380,LOC107674718 coding upstream 67756 17043049 ~ 17045292 (+)
zc3h7a zc3h7a,LOC107727124,LOC107564690,LOC107674666,LOC107703382 coding upstream 75561 17024634 ~ 17037487 (+)
trnat-cgu_1 NA coding upstream 107063 17005914 ~ 17005985 (+)
LOC122341973 NA coding upstream 177529 16934133 ~ 16935519 (+)
LOC122332748 NA coding downstream 264742 17381783 ~ 17384185 (+)
hs3st2 hs3st2,LOC107741797,LOC107550309,LOC107574133,LOC107703334,LOC107674621,LOC108433116 coding downstream 306247 17423288 ~ 17449492 (+)
ube2ia ube2i,ube2ia,LOC105013396 coding downstream 449222 17566263 ~ 17570451 (+)
baiap3 baiap3,LOC107719179,LOC107550313,LOC107703313,LOC107674731,LOC107565767,LOC107749910 coding downstream 461699 17578740 ~ 17622221 (+)
gpr146 LOC107565765,LOC107710650,LOC107674685,LOC107703371,LOC107550312,LOC107719180 coding downstream 541393 17658434 ~ 17668692 (+)
G20803 NA non-coding upstream 4354 17107992 ~ 17108694 (+)
G20831 NA non-coding upstream 36874 17075788 ~ 17076174 (+)
G20830 NA non-coding upstream 37473 17075353 ~ 17075575 (+)
G20829 NA non-coding upstream 38224 17074622 ~ 17074824 (+)
G20801 NA non-coding upstream 50225 17057704 ~ 17062823 (+)
G20908 usp31,LOC107703377,LOC107550315,LOC107674671 non-coding downstream 386855 17503896 ~ 17516429 (+)
G20915 LOC107550314,LOC107703374,LOC107719177,LOC107565769,LOC107741796 non-coding downstream 436333 17553374 ~ 17563364 (+)
G20927 NA non-coding downstream 455089 17572130 ~ 17572473 (+)
G20953 NA non-coding downstream 533726 17650767 ~ 17651301 (+)
G20951 h3f3b,H3F3A,LOC105909691,LOC101073377,LOC107388308,LOC102790198,LOC107572204,LOC106578873 non-coding downstream 572374 17689415 ~ 17690288 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other upstream 328237 16770545 ~ 16784811 (+)
LOC122331507 psmg3,LOC107703392 other upstream 413566 16690703 ~ 16699482 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other upstream 905202 16179620 ~ 16207846 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 1368854 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 1832935 15269800 ~ 15280113 (+)
LOC122341316 NA other downstream 20889 17137930 ~ 17200630 (+)
G20950 igfals,LOC107703367,LOC107719182,LOC107674637,LOC107565761,LOC107710645 other downstream 602141 17719182 ~ 17723423 (+)
mrtfbb LOC107725018,LOC107572174,LOC107703365,LOC107674669 other downstream 753136 17870177 ~ 17901491 (+)
polr3k polr3k,LOC107703329 other downstream 787543 17904584 ~ 17906643 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other downstream 803876 17920917 ~ 17929634 (+)

Expression


nsmce1(nsmce1) Expression in all Baseline Samples

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nsmce1(nsmce1) Expression in each Bioproject

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nsmce1(nsmce1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network