G18902


Basic Information

Item Value
gene id G18902
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10252108 ~ 10252654 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21228
GCCACCATAAATCAAAGCAGCAGGTTTGTAGCTTACCAGTCCAGACTTCTCCTGACGAAACAACAGATCGACCGGGGGAACATAAGACCTAATCGATTTTGAATAAATAGCTATGAATGCAGCCCCTCAAAAACAGTCTGAAATGAAGGTCATATTTACTTGTATGAATGTTATGGTGAATTTGTTCAAAAATTAGGTCAAGCTCGTAAGCTTCCAAGATCACCGACAACTGAAGCGCACATTTATAATTTGACACAGTTGGTGCAGGCAGTGGGCCAAACTGGGAGTGGGCTGCTGACTCAGCCACCAATGGTGCATTCATTTATCTGCACTGCAGTGCTCCGCCGCACCCTCTCCTCTCTGTCTCCACCTCGCCTCGCACACGCTGAAACGGGGGGCGGTGAGACAGACATTTTAAGATAAATTCCAGGTCCGTACCATGAGTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21228 True 448 lncRNA 0.36 2 10252108 10252654

Neighbor

gene id symbol gene type direction distance location
CI01000001_10150798_10152858 MIPA coding upstream 99170 10150373 ~ 10152938 (+)
CI01000001_10141190_10146911 PTGES3, PTGES3A coding upstream 104050 10141190 ~ 10148058 (+)
CI01000001_10093069_10104108 RND1B, RND1, RND1A coding upstream 146409 10092902 ~ 10105699 (+)
CI01000001_10072627_10081119 CACNB3, CACNB3A, CACNB3B coding upstream 170929 10072627 ~ 10081179 (+)
CI01000001_09946111_09958162 NA coding upstream 293862 9944120 ~ 9958246 (+)
CI01000001_10321783_10325266 NA coding downstream 68993 10321647 ~ 10325305 (+)
CI01000001_10328133_10329110 NA coding downstream 75386 10328040 ~ 10329110 (+)
CI01000001_10395420_10396473 NA coding downstream 142197 10394851 ~ 10396705 (+)
CI01000001_10420931_10426716 NA coding downstream 167664 10420318 ~ 10427147 (+)
CI01000001_10525795_10530510 WNT1 coding downstream 270608 10523262 ~ 10530543 (+)
G18890 NA non-coding upstream 26580 10224926 ~ 10225528 (+)
G18870 NA non-coding upstream 40662 10211229 ~ 10211446 (+)
G18864 NA non-coding upstream 42291 10202501 ~ 10209817 (+)
G18813 NA non-coding upstream 71272 10170951 ~ 10180836 (+)
G18815 NA non-coding upstream 87114 10159147 ~ 10164994 (+)
G18874 NA non-coding downstream 32109 10284763 ~ 10335916 (+)
G18884 NA non-coding downstream 52277 10304931 ~ 10320075 (+)
G18880 NA non-coding downstream 84233 10336887 ~ 10338149 (+)
G18878 NA non-coding downstream 87383 10340037 ~ 10344121 (+)
G18876 NA non-coding downstream 138034 10390688 ~ 10391598 (+)
G18896 NA other upstream 10616 10239900 ~ 10241492 (+)
CI01000001_09435836_09436037 NA other upstream 814045 9435836 ~ 9436373 (+)
G17354 NA other upstream 1011431 9234463 ~ 9240677 (+)
G17353 NA other upstream 1023249 9216022 ~ 9228859 (+)
G17234 NA other upstream 2219625 8032124 ~ 8032483 (+)
G18873 NA other downstream 4458 10223879 ~ 10260714 (+)
G18872 NA other downstream 18492 10271146 ~ 10281369 (+)
G18937 NA other downstream 222330 10474984 ~ 10476389 (+)
CI01000001_10538498_10539667 RPS26 other downstream 285818 10538388 ~ 10539846 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022399 si:dkey-157g16.6 coding NC_007134.7 CM002907.2 27134942 ~ 27245235 (-)