LOC122342135 (LOC107695140,LOC107758481,LOC107583074)


Basic Information

Item Value
gene id LOC122342135
gene name LOC107695140,LOC107758481,LOC107583074
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12509191 ~ 12510507 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235933.1
ATGTTAAGAGTAGTGCTGGCCATTTGTTTTTGGGCCGTCTGCCCATTGTTTCTTTCAGCCTACGAGGCTCCTGAAGATAAGGAGGACATCTTTGCCAGAAGGGCCTGTCCTGCATTTCTAGTCTTTGACTCTGCTGCCTTCCAAGCTGATATGACCATTGAACTTCCTTGTCACTGTAAACCAGAGGAGACTCATTCAGTGGTGTGGTACTATCAAAAACAAATTGGCTCCATGAACACCAAAGTCCTCACAGACTTTGAGGGCACTACGGTGGTGGAATCATCCAAAGCCGGCACCGATCTGCGCAGTCGTTTTTCCATCCGTTTGTTTAGTCTTCTCATCTTCAGGGTGCGGAAAGCTGACTCGGGGCACTATATCTGCGGCACGGCCTCTGGTGAATTCTTCTACGGCTACGATGTTGATGTTCAGGAGGTCCGTCAAGTTTTATTTCCCTATAGCATCAAACAGAGCACTGAAGTGCAAGAAGCAGAGCCCATCATCATGAAAACTGAAAAGTTTCAGGTGTTCACCAGGTATGGGCTGTGGTCTAAATGTGACCGATGTGATGTCTGGGGGGAGCAGATGCGTGTAGGTCTCTGTTACATCAAAAGCATCTACCTCCATGTACGTTATCAGCGTGAATCGGTCACAGAGGCTCCCTGCGGTTCCTCAGCCGTTCCCCGACAGTTTGGTCTTTCTGGCAGTAGCTACGGAGCCAAGCTTGAGGTGAGGAACTGTCACAGCCCCTGTCCTCCAAAACCTACCACATCTTCAGAGAGACAAGCTCTGATGAAGTTCCTTGAGTTTGATGATCGATCCTCTTCAGGTGTCACCATCCACTTTCACAACCACCCCACAGACTCTGATCTGGTCCTGACCTGTCCTGGGGCCAAAGCGCAGTATGCTGTCGCCTGGGATAAAGCTTCAGCACCGCTTTACCGTTCTCAGTATATAGAGGGACTGAATAAGACGTCTCGTGTCTTTATTGACACCGGTCACCACCTACACTTCAGACCTTTGCGGCTGGAAGACAAAGGCTCCTACATCTGCTGGCTCCAAGGAGAGCTTGCTGCAGAGATCAGATTGGGAGTGTATTTGCGCTTGGGACGTTCGCGTCAAATCTGGGATCCAGAGTCTGTCTACGCACTTCAACTTATACTTGCTTGCTACACTGCCATTTCTGCTATGTTTCTCCTCACTGTGACAGTCAGGTTTATTTGGCAGATAAGCAAAGAAGAAACATCTTCTCATATTAACTGGAATGTGCTGTAGTTGTACTGACGCACAATTAATGTGAAGTgcaaattgaaattaaat

Function

NR:

description
PREDICTED: Ig-like V-type domain-containing protein FAM187A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235933.1 True 1317 mRNA 0.48 1 12509191 12510507

Neighbor

gene id symbol gene type direction distance location
abi3a LOC107758490,LOC107583075,LOC107695026 coding downstream 399 12498774 ~ 12508792 (-)
si:dkey-283b1.6 NA coding downstream 11180 12493718 ~ 12498011 (-)
rarab rara,rarab,LOC108434941,LOC108276117,LOC108261354,LOC107737746,LOC107695008,LOC107554136,LOC107582978,LOC107689638 coding downstream 61467 12345435 ~ 12447724 (-)
LOC122342092 LOC107758479 coding downstream 176350 12322244 ~ 12332841 (-)
LOC122336412 LOC107658520,LOC107554095,LOC107582983,LOC107729569,LOC107689640,LOC107737779 coding downstream 189125 12315450 ~ 12320066 (-)
ccdc103 LOC107758482,LOC107583073,LOC107695153 coding upstream 102 12510609 ~ 12512465 (-)
rpl23 rpl23,RPL23,rl23 coding upstream 2096 12512603 ~ 12514795 (-)
si:dkey-283b1.7 si:dkey-283b1.7,LOC107758487,LOC107695187,LOC107689703,LOC107554098,LOC107737768 coding upstream 4643 12515150 ~ 12521787 (-)
sgsm3 sgsm3,LOC107737740,LOC107695086,LOC107758493,LOC107689630 coding upstream 19602 12530109 ~ 12544481 (-)
LOC122329559 LOC107582973,LOC107723206,LOC107554143,LOC107695115,LOC107689629,LOC107737739,LOC796777,LOC108436680 coding upstream 60521 12571028 ~ 12661848 (-)
LOC122332655 NA non-coding downstream 213768 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 238255 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 278812 12226575 ~ 12230379 (-)
G19503 NA non-coding downstream 326707 12182258 ~ 12182484 (-)
G19463 NA non-coding downstream 411829 12092899 ~ 12097362 (-)
G19677 LOC107737766 non-coding upstream 353803 12864310 ~ 12886954 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding upstream 390274 12900781 ~ 12902910 (-)
LOC122332187 NA non-coding upstream 562053 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 569563 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 580164 13090671 ~ 13091152 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 165319 12339187 ~ 12343872 (-)
LOC122341756 NA other downstream 588424 11909775 ~ 11920767 (-)
G19383 NA other downstream 628232 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 781190 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 794472 11694272 ~ 11714719 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 112276 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 171483 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 495489 13005996 ~ 13068190 (-)
G19700 NA other upstream 536534 13047041 ~ 13047494 (-)
gng13b NA other upstream 1275502 13786009 ~ 13792602 (-)

Expression


Co-expression Network