rpl23 (rpl23,RPL23,rl23)


Basic Information

Item Value
gene id rpl23
gene name rpl23,RPL23,rl23
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12512603 ~ 12514795 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235935.1
GGTGTAGGGACGATGGCGTTGAAGTGTGCGCCGGATGCTGCGAGAGATGTGGCACGCGCACGATTATATCCCAGcattcctttctctctcttcctctttccctTTCGGCGACAATGTCTAAGAGAGGACGTGGTGGGTCATCGGGAGCCAAGTTCCGTATTTCACTGGGTCTCCCAGTGGGAGCGGTCATCAACTGCGCTGACAACACAGGTGCTAAGAACCTGTACATCATATCCGTCAAAGGCATCAAGGGTCGTCTGAACAGGCTCCCCTCCGCTGGTGTGGGCGACATGGTCATGGCCACAGTGAAGAAAGGCAAGCCAGAGCTCAGGAAAAAGGTGCATCCTGCGGTGGTGATACGACAGCGGAAGTCGTATCGGCGAAAAGACGGCGTGTTTCTATACTTTGAAGACAATGCAGGGGTCATAGTGAATAACAAAGGAGAAATGAAAGGCTCAGCCATCACAGGACCCGTAGCCAAGGAATGCGCAGACCTGTGGCCCAGGATTGCTTCCAATGCTGGTAGCATTGCCTGAGCGGAAATTCGGCTTGTCGTTTTCAATAAAATCCTCAAAGTTTA

Function

symbol description
rpl23 Predicted to enable large ribosomal subunit rRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Orthologous to human RPL23 (ribosomal protein L23).

NR:

description
60S ribosomal protein L23

GO:

id name namespace
GO:0006610 ribosomal protein import into nucleus biological_process
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006413 translational initiation biological_process
GO:0006414 translational elongation biological_process
GO:0006415 translational termination biological_process
GO:0019083 viral transcription biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005730 nucleolus cellular_component
GO:0005515 protein binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02894 RP-L23e, RPL23; large subunit ribosomal protein L23e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235935.1 True 580 mRNA 0.52 5 12512603 12514795

Neighbor

gene id symbol gene type direction distance location
ccdc103 LOC107758482,LOC107583073,LOC107695153 coding downstream 138 12510609 ~ 12512465 (-)
LOC122342135 LOC107695140,LOC107758481,LOC107583074 coding downstream 2096 12509191 ~ 12510507 (-)
abi3a LOC107758490,LOC107583075,LOC107695026 coding downstream 3811 12498774 ~ 12508792 (-)
si:dkey-283b1.6 NA coding downstream 14592 12493718 ~ 12498011 (-)
rarab rara,rarab,LOC108434941,LOC108276117,LOC108261354,LOC107737746,LOC107695008,LOC107554136,LOC107582978,LOC107689638 coding downstream 64879 12345435 ~ 12447724 (-)
si:dkey-283b1.7 si:dkey-283b1.7,LOC107758487,LOC107695187,LOC107689703,LOC107554098,LOC107737768 coding upstream 355 12515150 ~ 12521787 (-)
sgsm3 sgsm3,LOC107737740,LOC107695086,LOC107758493,LOC107689630 coding upstream 15314 12530109 ~ 12544481 (-)
LOC122329559 LOC107582973,LOC107723206,LOC107554143,LOC107695115,LOC107689629,LOC107737739,LOC796777,LOC108436680 coding upstream 56233 12571028 ~ 12661848 (-)
LOC122332086 gtf2f1,LOC107737737 coding upstream 459913 12974708 ~ 12980093 (-)
LOC122331923 NA coding upstream 466292 12981087 ~ 12987204 (-)
LOC122332655 NA non-coding downstream 217180 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 241667 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 282224 12226575 ~ 12230379 (-)
G19503 NA non-coding downstream 330119 12182258 ~ 12182484 (-)
G19463 NA non-coding downstream 415241 12092899 ~ 12097362 (-)
G19677 LOC107737766 non-coding upstream 349515 12864310 ~ 12886954 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding upstream 385986 12900781 ~ 12902910 (-)
LOC122332187 NA non-coding upstream 557765 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 565275 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 575876 13090671 ~ 13091152 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 168731 12339187 ~ 12343872 (-)
LOC122341756 NA other downstream 591836 11909775 ~ 11920767 (-)
G19383 NA other downstream 631644 11853748 ~ 11880959 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other downstream 784602 11712820 ~ 11728001 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other downstream 797884 11694272 ~ 11714719 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other upstream 107988 12622783 ~ 12679800 (-)
cacna1aa LOC107690704,LOC107571502 other upstream 167195 12681990 ~ 12763090 (-)
G19676 LOC107690708 other upstream 491201 13005996 ~ 13068190 (-)
G19700 NA other upstream 532246 13047041 ~ 13047494 (-)
gng13b NA other upstream 1271214 13786009 ~ 13792602 (-)

Expression


Co-expression Network