LOC122342138 (LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086)


Basic Information

Item Value
gene id LOC122342138
gene name LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 18545034 ~ 18550427 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235936.1
ctgtctgtctctgcacCATTAGTGAGGTCCGTGCTGCAGACACCGCCTTGCCAACCACACTGCTCTTCGTAGTCCTTAAGTGCTAACTCAACGCAGAGggaacattttttgtaaatttttcaaaaatctacAGAACACACCGGCTGGCGAAGGGATCCTTGTGTTCGTCTGTCATTGGGAACAAGCGTGCAAACTATTGGAATACTTTGGACCTCTTGACGTCACCTGTTCTACCTCGCCATAGCCTGGGTGCAGCCGAGTGTCTGTGTGATcgcgtgtgagtgtgtttgtgaacgTGTGTGGTTTAAGAGGATCTAGGTGGTGTCTACATTGGGTTTTGGTTTAACAGGTGCACGTGCAGGAGCGTTGCACTGTGGTTCCTCTGTTTGGATTTACTGCTCTGATCAGACATGGCTACTCTGAGAAGCTTGCTGCTAGGGCTCTTGTTGGCCCTGCTTTGCTCCTTCCAGACACCGCTGGCGCCCTCAGCCTCTGTCAAAGCCCAGGATCTGCCATTTGTCCGTGAGGAAGGCCTGAtggctgatgatgatgatgacgatgatgatgacgacgacgacgatgatgatgatgacgacgatgatgacgacgacgatgatgatgatgacgatgatgatgatgacgatgatgacgacgatgatgacgacgatgatgatgacgacgatgatgacgatgacgacgatgacgacgacgacgatgatgatgatgatgatgatgacgacgatgatgacgatgacgacgatgatgatgatgacgatgatgacgatgatgatgacgatgacgaCGATGACGACgatgacgacgatgatgatgatgatgatgatgatgatgatgacgatgacgacgacgacgatgatgatgacgatgatgatgacgatgatgacgacgatgatgacgacgatgatgacgacgacgatgacgacgatgatgatgacgatgatgacgacgatgatgatgacgacgatgatgatgacgatgatgatgatgatgacgatgatgacgacgatgacgatgatgatgatgatgatgatgatgatgatgatgatgatcatgaAGatgatgacgatgatgatgattatcATGAAGGATCTATTTGTTCACTGTGTGCCCACTGTGAGCACTGCGACAGCTGTGATAAGTGCCCATGCAAAAAGAAAGATGACTCTGCGCACTGTGACTTCTGTGATGACTGTGGAAAGTGCTACATGTGTCCTGTTTGTGAGGCCGTCTGCAAGCCAGgtgGCTTTGTCGACTCTGTTTCTGGATCCATCTATAAGACTGTCGCAGACGTCTTtaatgatgatgacgatgacgacgacgacgacgatgacAACTAAACCCATTCATCACCAGCATGTGGCCAAAAGAGGAACGTGCAATTGGGCGTTGCGTTTCACAGATTTCAGGATTTACATTGTAGCGTTATGTTCATTgtcattaagttattttttctctttttaatgttATCACATCACACGCTACAGTCTGgtcaataaatacatatacgtGGAACTTAACTAATTTCATTAGGCTaccttaaattaaatgtatttaattgaacAACATTTCCCTTTTAAACAGTCTTGTGATTAACAAAAGTTATGATATGAAATGTAATTGCAAACCTAACTGTGTTGTTTTGAGACTACTTATGGAATAAAATGAGggaacgttttatttatttgtttaagtaataatactttaaaaccTACATCAGTGTTGACAGAGTATAATTGTCTGTGAGGGATGTCCTTACTGTCTCTGTTAAATAGGTTGTAATGTTTTTCACTTTGCTGTCAATTTTTCCGCTGACGAAACATGATTTCCAAACATGATTTGTGATATTAAATATGGCCTTAAAGGGATGttaatccaaaaaacaaaactgtgtcatctttactcaccatcatgttgtttcaaagtTCTGAACTAGCACGAGTGAGCCTTTAGATATAATGTCCACTAGTATGGTAtggtaataaaaacaactaaatatt

Function

NR:

description
PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235936.1 True 2015 mRNA 0.43 6 18545034 18550427

Neighbor

gene id symbol gene type direction distance location
hsd17b14 NA coding upstream 5907 18537733 ~ 18539127 (+)
LOC122342177 sgsm3,LOC107737740,LOC107689630,LOC107758493,LOC107695086 coding upstream 7931 18531295 ~ 18537103 (+)
rab40c rab40c,LOC107685905,LOC107590575 coding upstream 27363 18507155 ~ 18517671 (+)
pigq pigq,LOC107690265,LOC107733876,LOC107729199,LOC107590576,LOC107685906 coding upstream 40996 18495594 ~ 18504038 (+)
clec16a clec16a,LOC107690263,LOC107590577,LOC107567904 coding upstream 57486 18443371 ~ 18487548 (+)
LOC122341960 llgl1,LOC107720045,LOC107674688,LOC107703430 coding downstream 566 18550993 ~ 18566606 (+)
LOC122341319 psmc3ip,LOC107601296,LOC107721526,LOC107654517,LOC107720012,LOC107590372,LOC107688134 coding downstream 22237 18572664 ~ 18574419 (+)
retreg3 fam134c,LOC107601294,LOC107590373,LOC107720010,LOC107654515,LOC107688130 coding downstream 154086 18704513 ~ 18711635 (+)
LOC122342072 psmc3ip,LOC107721526,LOC107654517,LOC107601296,LOC107720012,LOC107590372,LOC107688134 coding downstream 164498 18714925 ~ 18719722 (+)
LOC122329464 rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173 coding downstream 405603 18956030 ~ 18959493 (+)
G21076 NA non-coding upstream 386488 18158171 ~ 18158546 (+)
G21073 NA non-coding upstream 425608 18116538 ~ 18119426 (+)
G21045 NA non-coding upstream 477716 17980167 ~ 18067318 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding downstream 24260 18574687 ~ 18744585 (+)
LOC122331012 NA non-coding downstream 101934 18652361 ~ 18654715 (+)
G21180 NA non-coding downstream 152157 18702584 ~ 18703683 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding downstream 303682 18854109 ~ 18854543 (+)
G21151 NA non-coding downstream 708490 19258917 ~ 19287649 (+)
nubp1 nubp1,LOC107690260,LOC107685912,LOC107590599 other upstream 119958 18405966 ~ 18425076 (+)
si:ch211-157c3.4 LOC107690254,LOC107733863,LOC107738629,LOC107568011,LOC107685921,LOC107590583 other upstream 443101 18097645 ~ 18101933 (+)
LOC122341796 pde6g,LOC107690252,LOC107733865,LOC107685924,LOC107590586 other upstream 469418 18074075 ~ 18075616 (+)
si:ch211-66e2.5 si:ch211-66e2.5,LOC107572173,LOC107703361,LOC107596817,LOC107754045,LOC107735828,LOC107674574 other upstream 615400 17920917 ~ 17929634 (+)
polr3k polr3k,LOC107703329 other upstream 638391 17904584 ~ 17906643 (+)
G21173 LOC107601293,LOC107688129,LOC107720008,LOC107654513 other downstream 131927 18682354 ~ 18687853 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other downstream 175534 18725961 ~ 18732098 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other downstream 182738 18733165 ~ 18733765 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other downstream 278238 18828665 ~ 18841760 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other downstream 318839 18869266 ~ 18876127 (+)

Expression


Co-expression Network