c3h16orf89 (si:ch211-76l23.7,LOC107738634,LOC107568163,LOC107733838,LOC107690316)


Basic Information

Item Value
gene id c3h16orf89
gene name si:ch211-76l23.7,LOC107738634,LOC107568163,LOC107733838,LOC107690316
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 10385450 ~ 10389073 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235939.1
TAAAGCGGCGGACCTGAGCCACGTGATGGGTTTGCTATGACAAACAGCTTCGCcttcaaaataagaaaaaaaagctactgGACAGACCACTCGCCCATTAACTATTTTCcgtttatttagtattttcaaAGTTCTTAAAATGTGGCATCTTTTCCTTGTGATTCTTATTCTCTCGTCTACAACTGATTTATCAAATCAGGACGTGATTGATAACATACTTCTGAGTTTATCCAAGGGAATTACATACTTTGACATGCAAGGAAGAAACATCAACCTGGACGGTGTCGTTGGATACCTAATACTTCAAGCGCAGCTGCAGGAGGCAACTCGAACTTGGCCGCATTCAGATTTTCTGAGTCTCTCTCAGCGAGCGGCTGCTGTTTCTATGTTGAAGAGACTGAACAAGAGCCTTTCTACTGCCGTCAGCGCTCTTCAGGAGACAGATCCCAAATACTACAAAGAGTTTGAGCCCATTTTGGACGGCTCCTTCTGGTCCCTGCCTGCAGAATGGAGCTCCACGGATCCCTCTCTCGTTTATACCTCAGTGAGGTCTATGGAGTGCTATGATGAGCAGTTGAGTGACAAGTGCATGACTCTCCTTCTAGGCACATGGAAAGACAACGGAACCCCATGCATTGTGACCAAGTCTTGCAGAGACACAATGACGCAATTCGGATGTCCGCACTATTCCCTGTCCCACCAGCTACTGTACTTCATGATAGGAATGATGAAAGGGTGCTCCAGAATGCTGAAGGGGGACCTGAGACTGTCTCGTGTCAACATTACTGTGGACCATTATAAGAGAATCTTCTGCTCCAACATGATGAAAAGCAACCAGGACATTTTCAAGAATGCTATTACTGCTCAAATGCAGgacatttttatagaaaacattcTTTTATGTGGTTTAGTGGGATTCTCGGACTTCTATAAACTGGACTGGTTGCAGTCTATTCTAACATGGCAAGATCAAGAAGCAGGCTGTTTTGGCAAAGAGGAGGACATCTCCCAGATCTTCGAGGAATTCTTGGATGCACCCCACAAACGggtgaaaagaagagaaaaaacactgaCAGATGGCTGCTCAAGTCATATGACAGGAGTTGCAGTGAGTACATTAGGAGGATTTCTCAACTATTACCTTTCAGAGCAGGACATAACGAAGAGACCCTTAATTTAAGGCCGTGCTTCATGAGATAAATCATTACAGAACTCAGTTTCCTTCTTTATCATGCTTTACAGATATTTATTCTTTCctctttgatcattttaatgaaagtgcTGTAGATTTAATGATATGTACACGATTCCAAGACAATGAATAGAAAGGCAAATGTTTTATGGTAAAAccaagaaaatgtatattttatatcaaataaataaaaaaaaccatacaGTA

Function

symbol description
si:ch211-76l23.7 Predicted to be located in extracellular region. Orthologous to human C16orf89 (chromosome 16 open reading frame 89).

NR:

description
PREDICTED: UPF0764 protein C16orf89 homolog, partial

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235939.1 True 1399 mRNA 0.42 8 10385450 10389073

Neighbor

gene id symbol gene type direction distance location
si:ch211-76l23.4 si:ch211-76l23.4 coding downstream 13247 10370056 ~ 10372203 (-)
gsg1l gsg1l,LOC107690243,LOC107738642,LOC107685933,LOC107568433,LOC103031039,LOC108436662 coding downstream 39143 10332223 ~ 10346307 (-)
fbxl16 fbxl16,LOC107568165,LOC107685932,LOC107738613,LOC107733860,LOC107568127,LOC107690242 coding downstream 69724 10297430 ~ 10315726 (-)
mettl22 LOC107738618,LOC107733833,LOC107590588,LOC107685927,LOC107568640,LOC107690247 coding downstream 410889 9964451 ~ 9974561 (-)
abat abat,LOC107690246,LOC107738621,LOC107685926 coding downstream 422322 9941285 ~ 9963128 (-)
cyth4a cyth4a,LOC107551152,LOC107690334,LOC107733836,LOC107561350,LOC107680872 coding upstream 229358 10618431 ~ 10625491 (-)
LOC122334005 LOC107680844,LOC107561345,LOC107732849 coding upstream 289941 10679014 ~ 10687531 (-)
LOC122334013 LOC107680844,LOC107561345,LOC107732849 coding upstream 300346 10689419 ~ 10693664 (-)
apol si:ch73-233k15.2,LOC107690330,LOC107729516,LOC107561347,LOC107732904,LOC107680847,LOC107551140 coding upstream 309920 10698993 ~ 10702733 (-)
rpl3 LOC107680866,LOC103374755,LOC107687640 coding upstream 389837 10778910 ~ 10782591 (-)
G18638 LOC107703356,LOC107674672,LOC107754020,LOC107596819 non-coding downstream 476833 9901531 ~ 9908617 (-)
G18634 LOC107596828,LOC107588005,LOC107596825,LOC107703325,LOC107587921,LOC108440249,LOC108440213 non-coding downstream 592265 9789616 ~ 9793185 (-)
G18628 hbaa1,si:ch211-5k11.8,LOC107682494,LOC107587926 non-coding downstream 599326 9785249 ~ 9786124 (-)
G18623 NA non-coding downstream 631928 9753235 ~ 9753522 (-)
G18608 NA non-coding downstream 738884 9646313 ~ 9646566 (-)
G18717 NA non-coding upstream 12760 10401833 ~ 10402211 (-)
G18745 NA non-coding upstream 185094 10574167 ~ 10579140 (-)
G18771 NA non-coding upstream 288384 10677457 ~ 10678580 (-)
G18795 LOC107732905,LOC107729518,LOC107551141,LOC107551149,LOC107690331,LOC107680850,LOC107561346 non-coding upstream 300091 10689164 ~ 10697539 (-)
LOC122334019 NA non-coding upstream 300346 10689419 ~ 10695504 (-)
rbfox1 rbfox1,LOC107733849,LOC107690317,LOC107685930 other downstream 174834 9993833 ~ 10210616 (-)
G18433 LOC107670519,LOC107563315 other downstream 922545 9426572 ~ 9462905 (-)
LOC122331343 LOC107672446,LOC107711185,LOC108429658,LOC107579184,LOC107567225,LOC106600921 other downstream 1247361 9134043 ~ 9138089 (-)
zgc:113210 NA other downstream 1378007 8992714 ~ 9007443 (-)
fmc1 NA other downstream 1986622 8309532 ~ 8398828 (-)
eef2kmt eef2kmt,LOC107690238,LOC107733874,LOC107568155,LOC107680861,LOC107738633 other upstream 5241 10394314 ~ 10396341 (-)
lrrc4ba lrrc4ba,lrrc4b,LOC107551155,LOC107680881,LOC107667844,LOC103034410,LOC107563987,LOC107732840 other upstream 622863 11011936 ~ 11064598 (-)
syt17 syt17,LOC107729446,LOC107658452,LOC107564007,LOC107732856,LOC107674134 other upstream 1022912 11411985 ~ 11429179 (-)
map3k3 map3k3,LOC107658467,LOC107583042,LOC107570753,LOC107674169,LOC107721962 other upstream 1305199 11694272 ~ 11714719 (-)
limd2 limd2,LOC107674139,LOC107658411,LOC107721965 other upstream 1323747 11712820 ~ 11728001 (-)

Expression


Co-expression Network