arl5c (arl5c,LOC107670909,LOC107754318,LOC107567387,LOC107745936,LOC107689047,LOC108260527)


Basic Information

Item Value
gene id arl5c
gene name arl5c,LOC107670909,LOC107754318,LOC107567387,LOC107745936,LOC107689047,LOC108260527
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20287163 ~ 20290477 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235940.1
GTCAGCACGCGTCGTTTAAATGAGCGGAGTGCAGACGCCCACGAAAAACACGACGAGACTCCGTATTTCGGCCCGATTTACTGTATCGGAGCAGAGGGGTAATTAGACAGACACCAGACGATTAACCCACAGACGCTCAGGGAACGGATCTCCTAACGCTTCGGCCCTGAGCTCCGGCGTCCGAACGGTCTGTTTGACAGGACGGAGCAACAAGCAAAAGGGGAATGCTATCGATCCTTGGACCGTTGTTTTAACGTAACAAAGTATTTATAGCACCGCTTTAAAGAATCAAAGGACCCAGAAGATCAAATTCAGTCCAGCGCTCGGACAATTGAGAAAACCCGGTGAGATCGATTGACAAAACCGGCCTTTTAAACTCCCTGCCTTCGGAGATGGGGCTTCTCTTCGCCAAACTGATGACTGTGTTCGGAGACAGAGaACACAAAGTAATTATTGTCGGTTTGGACAACGCCGGGAAGACCACCATCCTCTACCAGTtTTTAACAAAAGAAGCCGTGCAGACTTCACCTACAATTGGCAGCAACGTGGAGGAAATTGCTGTGAAGAAAACGCGCTTCCTCGTCTGGGACATCGGTGGTCAGGAGAGTCTCAGAGCTACCTGGAACTCGTATTACTGTAATACAGAGATTGTCATCCTGGTGGTCGACAGCACTGATCGGGAACGCCTGACTGTAACTAAAGAGGAGCTTCATCGCATGCTTGCACATGAGGACCTGCAGAACGCCTCGGTGCTGGTTTTGGCGAATAAGCAGGACATGAAGAACAGCATGTCTGCTGCAGAGATCTCTCAGAGTCTGACTCTCAGCTCGCTCAACGCTCGCTCCTGGCATGTCCAGGCCTGTTGCGCTCTCACTGGAGAAGGTTTACCAGCCAGTCTGGATTGGATGCGCTCCCGCGTTGTGGCGAATTAGTCCAGCAACAGTGCTCCTTAAACCTCTGCCGAAAGAAAGATCGGGCCTACTTAAGACTTTCGTCCAGCTCTCAGTGCCTCTGTCTGAGTAATCTTTATAAACTGAATCCTGGAGGAACGCGCTTCGTCCACTTACTCTGGATACCAGAACAAGCCTggagactctgtgtgtgtgtgagagagagaatttgTGTGTATGCGTATGAACGTTTGTGTTTGTACATTATGTGACTCCGTTCTAGAGGTCCACATGTTTACATTACTGACTTTTGCAATGATCTGACCTGATCATGATGTGTTGTCGCCACTGTATTCACCTCCGGCTGTGCTGACGGCTCCGCTTCTCACGTGGAGTTATTGTCTGCAGGCATCCATCTCAGTGGGGTGGTGGTGGGGGGTGTTGGTTCACATGCCTGTACTGATTCATGATGAACCACTAAGCTATTGAACAAGCATTACTTGAAGTATTTAAAGGGAATTGATTTGAGTATGCTATAGAGACGTGTGCATGCAGAATGGaacagttgtattttatttttaaaaagtatactGGATATTCAAAGTATGTTTTCttatataattttgtacaaaaaaaggtttttgtacaaataaaactactaaaaacgTG

Function

symbol description
arl5c Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport; protein localization to Golgi membrane; and vesicle-mediated transport. Predicted to be active in trans-Golgi network. Is expressed in several structures, including basal plate midbrain region; midbrain; presumptive diencephalon; segmental plate; and thymus. Orthologous to human ARL5C (ADP ribosylation factor like GTPase 5C).

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 5B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07950 ARL5B; ADP-ribosylation factor-like protein 5B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235940.1 True 1559 mRNA 0.47 6 20287163 20290477

Neighbor

gene id symbol gene type direction distance location
cacnb1 cacnb1,LOC106607253,LOC108413880,LOC107670911,LOC107689043,LOC107552492 coding upstream 2263 20254824 ~ 20284900 (+)
bckdhbl LOC107731123,LOC107689045 coding upstream 35674 20248076 ~ 20251489 (+)
gjc1 LOC107653474,LOC107731105,LOC107570945,LOC107567456,LOC107754260,LOC107690314,LOC564307 coding upstream 57493 20201276 ~ 20229670 (+)
LOC122341342 LOC107754194,LOC107690309,LOC107731071,LOC107653446,LOC107570938 coding upstream 126982 20148514 ~ 20160181 (+)
LOC122341340 NA coding upstream 205118 20077002 ~ 20082045 (+)
lasp1 LOC107754308,LOC107745925,LOC107552489,LOC107689048,LOC107567378,LOC108413872,LOC108258608,LOC107670908 coding downstream 5995 20296472 ~ 20309460 (+)
trnac-gca_3 NA coding downstream 23783 20314260 ~ 20314331 (+)
atp6v0ca LOC107754334,LOC107567372,LOC107552490,LOC107745898 coding downstream 25841 20316318 ~ 20320290 (+)
spsb3a spsb3a,spsb3,LOC107689049,LOC107670907,LOC107745892,LOC107754412 coding downstream 31468 20321945 ~ 20327552 (+)
mrps34 mrps34,LOC107567325 coding downstream 37679 20328156 ~ 20331230 (+)
LOC122342124 NA non-coding upstream 101637 20173694 ~ 20185526 (+)
G21652 NA non-coding upstream 114161 20168636 ~ 20173002 (+)
LOC122341550 LOC107754194,LOC107690309,LOC107568235 non-coding upstream 125952 20160436 ~ 20161211 (+)
G21558 LOC107560741,LOC107567502,LOC107754185,LOC107731050,LOC107690308,LOC107653427 non-coding upstream 316744 19954076 ~ 19970419 (+)
G21586 LOC107578035,LOC107731050,LOC107690308,LOC107560752,LOC107560741,LOC107653427,LOC107754185 non-coding upstream 335232 19928729 ~ 19951931 (+)
G21660 NA non-coding downstream 49414 20339891 ~ 20345356 (+)
G21661 NA non-coding downstream 50595 20341072 ~ 20342296 (+)
G21669 NA non-coding downstream 103084 20393561 ~ 20393901 (+)
G21671 NA non-coding downstream 117315 20407792 ~ 20408327 (+)
G21687 NA non-coding downstream 189854 20480331 ~ 20518038 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 91442 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 173665 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 217910 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 883987 19399408 ~ 19403176 (+)
G21213 NA other upstream 994822 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 591721 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 1005225 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1347266 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1684775 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1686032 21976509 ~ 22025911 (+)

Expression


Co-expression Network