tmem100a (tmem100a,LOC107601598,LOC107710980,LOC107696362,LOC107695692,LOC107718941,LOC107567563)


Basic Information

Item Value
gene id tmem100a
gene name tmem100a,LOC107601598,LOC107710980,LOC107696362,LOC107695692,LOC107718941,LOC107567563
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3486152 ~ 3490051 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235951.1
agggacgCAGAGGCTCGTCTAGTGAATGAAAGCCTCACGCGGTCAGTCTCTCACAGGAGATCTTCGTCTGGAGCATAACGGGACTTTCACGTCTTCGGCTTGCTGAACAGGATCCGTGGAGGGCAGGATGGAAAACACGTGTGAGGTGTGGAAACCGGCACAGTAGAGCGTAGAGACGGCTCAGAGTGCGGCCGATGCCCCGAAACACGCTGACCCTCAACCCTGCGATGCCCACCGAGCTGCTTAAAGACACCATGACGATCCCCGGAGCTCCAGAGCGAATCCTGCAAGAGAAAACCAACAACAACGAGCCCCCTCTACCGCAGCCGCTGGCCGTCACCATCCCGCTGGTCAACGAGGGGCAGCTGACGGCGGCCACCGGCGGAGCAGAGCTGTCCTGCTACCGCTGCACCGTGCCCTTCGGGGTGGTGGTCCTGATCGCGGGGATCGTGGTGACGGCCGTCGCGTACAGCTTCAACTCCCACGGCTCCACCATATCGTATTTTGGACTGGTGCTGCTCTCGGCCGGGCTGGTGCTGCTCGCCCTGAGCGCCGTCTGCTGGAAGGTGcggatggagagaaagaaagagaggagacGAGAGAGTCAGACGGCACTGGTGGCCCATCAGAGGAGCATCTTCGCCTGATTCGACACAAGCACCAACTCAGAAACCTTCACGACGAACAAGTCAACGCGACACCCAGATGTTTCGCCTCAGGTCGGACCacagactgcaaaaaaaactatttctgcCTCCTTCCGGTGTATTAAAGAGAAGCCAGAACAGAAATTGTCCTTCTACAGAGACAAGAGGGTCTGAATCACTTGGATCACATGTGCCTTAATAGCCAATCTCGTTACAGCTTTGACGCCACTGAATTTCTAAACGTTGTGCGAGTTGTGCGACACTTAAGCAACGTTTGCGGATCCCACAGGAATGAACGAGAAGGGCTCTAAACGTATTTCCAATCGCAAAGTCATTGACTTCTTTtataaaagagcattttaaaaatgtaaaaatgagtaGTGAAGCCTCTCCTCCATTGACATCCGTCtgaaatggaaaatggaaacTGTTATTGGGAAAAAATGCAATTcgatttttttatgtcattaccAATAATGATTGAGAAATGTGTAAGTCAAAGCGTCATGTTTGGGACAATGTCCAAATAATTCGCTTTAAGGGGTAATGACACcccattttaatgtcattaaattaaattaaaactaaaaatcaaaaTGCTTCAGAATGGAAAGACAGACACCATCTTTGATTGGCTGGATTTTGCTCACGTTCCATCGGTTCACATAAAAGGGCGGGGTTTATGACGTATATTGCAGCCAGCCCCAAGGGTGCTAGAGATAAAAAGATCGGCACTGATGACCCACCAGAGGGCATCTTCTCCTGATTCGACAAAAGCAAGAACTCTTCATGACAAAGGAATGACAAACGAATCAAAGCATCAAAAGTGGTTGCCTAGGGTTTGGACAATAGACTGTGAAAAATGCAGGTCTTTTTCTCAAAGCCGCGGTATCAAAAACCCCCTCCTGAATTGCAACAGATGCAGTCACAAGTTTACAGTCGTGATACCACACCCCATTTTTTTAGCATCAACAAACTACATAAGAATAATGAACGAACGGACACTTGAAGATACATTGGAGTGATAAGAACTACCTGAAATGATGGGAGCGACATATTTTGAtagtaaatagattttttagtTCGGATCACATGGCACTGGTTTACATTGAGAGGGCGGGGTTTATGATTTATACTGCAGCCGGCCAGCAGGGGGCGGTCGACATGTTTTGGCCTTACTTTTCAAGACGTGTTTGGCACATTTGGGTCAGACAAACTGAAGGCTGTCAGAGAAATCGGAATGACGGTATTCCACGAACGACTCTCACGACGAGAGTTTGGGACAATTAATCGAGACGGACTCAGCTGCATGTGTCCAGATGTTGAGACACAgctgcaatataaaaaaaatcatctgctTAAAGTTCCAAT

Function

symbol description
tmem100a Orthologous to human TMEM100 (transmembrane protein 100).

NR:

description
transmembrane protein 100-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235951.1 True 2018 mRNA 0.48 2 3486152 3490051

Neighbor

gene id symbol gene type direction distance location
cbx2 cbx2,LOC107695690,LOC107710978,LOC107696361,LOC107718939,LOC107571836,LOC107601561 coding upstream 71065 3409777 ~ 3415087 (+)
LOC122333486 LOC107695665,LOC107601563 coding upstream 79022 3401426 ~ 3407130 (+)
LOC122333469 LOC107576979,LOC107673194,LOC107716248 coding upstream 205597 3277169 ~ 3280555 (+)
LOC122341575 LOC107678271,LOC107553656 coding upstream 213786 3269593 ~ 3272366 (+)
jpt1b hn1,LOC107696352,LOC107751437,LOC107677345,LOC107751632,LOC107565162,LOC107728178 coding upstream 827206 2647489 ~ 2658946 (+)
tmem220 tmem220,LOC107570714,LOC107579199 coding downstream 339598 3829649 ~ 3831319 (+)
mrps7 mrps7,LOC107695700,LOC107673207,LOC107724659,LOC107579769,LOC108262546 coding downstream 385275 3875326 ~ 3877867 (+)
sstr5 sstr5,LOC107601569,LOC107695669,LOC107673199,LOC107716263 coding downstream 405217 3895268 ~ 3901449 (+)
LOC122341043 LOC107716255,LOC107673187,LOC107695671,LOC107724671 coding downstream 421958 3912009 ~ 3916436 (+)
LOC122340641 LOC107724675,LOC107673198,LOC107601590,LOC107695672,LOC107716262,LOC107553642 coding downstream 438297 3928348 ~ 3938422 (+)
G16556 NA non-coding upstream 9566 3384548 ~ 3476586 (+)
G16549 NA non-coding upstream 106607 3379281 ~ 3379545 (+)
G16529 NA non-coding upstream 209172 3276399 ~ 3276980 (+)
G16492 LOC107696342,LOC107565150,LOC107563773,LOC107565157,LOC107579404,LOC107565149,LOC107755607,LOC107755606 non-coding upstream 783951 2699280 ~ 2702201 (+)
G16484 LOC107755608,LOC107563769,LOC107755618,LOC107565149,LOC107695670,LOC107575431 non-coding upstream 818893 2660875 ~ 2667259 (+)
G16575 NA non-coding downstream 50365 3540416 ~ 3540798 (+)
G16576 NA non-coding downstream 50906 3540957 ~ 3541640 (+)
G16589 NA non-coding downstream 78741 3568792 ~ 3569146 (+)
G16598 LOC106601484 non-coding downstream 104626 3594677 ~ 3598203 (+)
G16604 LOC107710983,LOC107695695,LOC107696365,LOC107718935 non-coding downstream 116121 3606172 ~ 4061550 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other upstream 163098 3320820 ~ 3323054 (+)
G16530 LOC107601546 other upstream 202496 3282990 ~ 3283656 (+)
sumo2b sumo2,sumo2b,LOC108411789,LOC103045390,LOC108441874 other upstream 839396 2641146 ~ 2646756 (+)
G16347 NA other upstream 917153 2568084 ~ 2568999 (+)
LOC122333054 LOC107708263,LOC107691115,LOC107755610,LOC107563748,LOC107672908 other upstream 1320459 2160346 ~ 2165693 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other downstream 20025 3510076 ~ 3526914 (+)
LOC122332297 NA other downstream 319119 3809170 ~ 3813344 (+)
G16667 NA other downstream 457572 3947623 ~ 3985611 (+)
G16672 NA other downstream 479464 3969515 ~ 4033526 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other downstream 866981 4357032 ~ 4405384 (+)

Expression


Co-expression Network