G18874


Basic Information

Item Value
gene id G18874
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10284763 ~ 10335916 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21192
ACATGAAATATTTACGCCGGCTCTGCACCGCCACACTCAGCCAGCAGCTTAGCGCCGTCTCTACGGCAGGCATAAAAATGGCTTTGAGTGTTCCAACAACGTCCCTGCAGAGACTACAGGAATATAAGCCGTGGGGGAGGGGGACCGTTTCACAGAGCGATGAAAGAATTCTTCATATTTTAATTCAAAGACTCTTGAAAAAAAAATGGAAAGAAAAAAAAAGACTTTCTAGAGGGGTTTTGTAGAATCCTCACCAGGTTTCCGACACTTAGCACATGCTCAAATTGCGGCGTCATAGGGTAATGCTCCATGGCCATGAAGAGAGTATTCAGCACAATACAAATGGTGATAGCCAAGTCCACAAAAGGGTCCATCACAATCATGTTCACAATCTCCTTAATCCTCATCCAAACGGGGCCACACTCCCAGATAAGAAATATGTTGGCGAATTTGTACCAGCATGGTGGACACTTCCTCTGAGACTCTTCCAGTTCCTCAACCAATGTGTTGGTTAACGCACTCATCACGCTGTTGGCTCGTTCCTTGCGCCCAAACGACGTGTTAAGCTGCTCTATGGAAACCATTAGAGAGCCTGAGAGCTTCTTCTTGATTTCGAGATCGGTGGTTTGCTCAGGCAGTAGGCGTCCGCCAGGCCCCGGCCCGATGAGAGAGACCACTCCATTGCAATCCACAGTGCTGTTGCGCTTGCCGTAGTAACCCGTGTAGCTGCTGCGACGTTGCGGGCTTAAGAATGAATCACGCCTCTCGTCGTACTCCTCAACCGTGCTGTGCTCATCATCTGCAAACTCGTTCTCCGAGCCTCCGTCCTTACAGCGGCTGAAGATGCTGCTCTTACTGTTGCGTCTTGAAGGGAATGGTGAGCCTGGGATGCTGAGCAGAGACTAGAGACAGAAAAAACAGTGAAAACAGGAAGAAATAATATTTTGATATCTAAGGCCATTCTGAAATAAACATGTTAGGTGCTAATAAATGTTACTGTAATTTTATTAGGATAGAAAAGATATTTCCTCTCTTAGCTCACACACACACACACACATTGAAGGGGTGTTCACACTGACAGCGATCTGCAACATCATCACGGTCCAGCACTCGGCGACCTCAGTGTGTCAGTGTGAACAGGGCTTACGAGAAACTGAATGACAAAACAGATATTAAACATGAAAATGGTCTATTCTGTGACTCTTGTAATGTGTAAAAATATTTGTTTCTGCATCATGATTTTGAGCAAATTATGCTGAAAACTGCCATCAAGTATGAAATATCAGTCAAGTTTTTGGAGGACCGGATAATGGGGTCCGTTTGTTTATACAGTAACACCAGTGAGACACTACAATATATAGTCTACACACAAACACCTTCCATCTGTTCATCTTTCCAGACCCTTTACACACACCAATCGAAATGAAAACAGGAACATACATTTCTGTCTTCATCTCGAAACATTTCTGTCACCTTCAATATACACGTTTAATGCATATAGATGTCAAGTTACAAATGTATTCTGTTAAAATTGCTGTGCTTTCAGTGAGGACAATTCCACAAAACCCTCCTCACTCCGGTTCACTACTGATGTGCATTACAGTTGGCATTGTCAGTAAAAAAAAAAAAAAAACTTTTTAAGCAACAATAAAATGTGGTGCATTTATTTTAAAACCATTAAAATGACTAGCAGTTTTGAATAAAAGAAGATATGTTTGTTTTGCTGGTGATACTGTTGATCCATAAAACTATGTTAGCACTTCCAGAATGAAAACCGAAGGACTCTCCTCGGAGCGCTCGCTCGGGAGAGGAGATAAAGTGCGCAGAAAGCTTCATGTAAGTCCCTCAGGTTTTGCTGCAAGAGCACAAGCGCTGCTCTATGGAAGAGGCATATCGGAAGTGGCACCAAATGTTGGACATCCAAGTCAATGCAACTTGTGAAGATGTGGTTTCACCTGTTTTAAAGGGCAGAAATATGTTCTAAAAGAAGAGCACCACCCTCCTGGATGTTCAGGGAGGGTTGGATGGCTTAAGCCGGGTGACCGCCATTGGTCGAACAGGCCACAATCACATTAAAGAGAACATAAAAATATGTACAAGGCTCAGCGCAGAGGCAGAAAGAGGCCTAGCCAGCTTCTTCCTCCGTGTCCATTTGTGTTCTGATGGCACAGAGGAACGGCCGCGTCGTGAGTGGATCTTTGGGTGCCACGTTGAGCTTTAAGTCCACTTCAGGCTCACATGTTGTATGCCACGTAGATGGGATCCAGCTGGTCGGCCAGGAAGGAGTCGCGCAGATGCATGCGTTGCTTCTCGCCCCGCGAGTTGATAGGGATGACGCCGGGGTCCACGATGACCACCACACCAACGATGAGGTGATGCTCTTTTAGAACCACATTAGTGACGAGGGGAACCAGATCAAGAGCTTCCTGCTCAGACCCACTGAGCTCCACCACGACCACCAGAAGATTGGTCCACGTGAAGACAGCGCTGTACGATGAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU21192 True 2499 lncRNA 0.42 5 10284763 10335916

Neighbor

gene id symbol gene type direction distance location
CI01000001_10150798_10152858 MIPA coding upstream 131825 10150373 ~ 10152938 (+)
CI01000001_10141190_10146911 PTGES3, PTGES3A coding upstream 136705 10141190 ~ 10148058 (+)
CI01000001_10093069_10104108 RND1B, RND1, RND1A coding upstream 179064 10092902 ~ 10105699 (+)
CI01000001_10072627_10081119 CACNB3, CACNB3A, CACNB3B coding upstream 203584 10072627 ~ 10081179 (+)
CI01000001_09946111_09958162 NA coding upstream 326517 9944120 ~ 9958246 (+)
CI01000001_10395420_10396473 NA coding downstream 58935 10394851 ~ 10396705 (+)
CI01000001_10420931_10426716 NA coding downstream 84402 10420318 ~ 10427147 (+)
CI01000001_10525795_10530510 WNT1 coding downstream 187346 10523262 ~ 10530543 (+)
CI01000001_10538498_10539667 RPS26 coding downstream 202472 10538388 ~ 10539846 (+)
CI01000001_10573770_10582123 LMBR1L coding downstream 237854 10573770 ~ 10582238 (+)
G18873 NA non-coding upstream 24049 10223879 ~ 10260714 (+)
G18902 NA non-coding upstream 32109 10252108 ~ 10252654 (+)
G18890 NA non-coding upstream 59235 10224926 ~ 10225528 (+)
G18870 NA non-coding upstream 73317 10211229 ~ 10211446 (+)
G18864 NA non-coding upstream 74946 10202501 ~ 10209817 (+)
G18880 NA non-coding downstream 971 10336887 ~ 10338149 (+)
G18878 NA non-coding downstream 4121 10340037 ~ 10344121 (+)
G18876 NA non-coding downstream 54772 10390688 ~ 10391598 (+)
G18882 NA non-coding downstream 66314 10402230 ~ 10403910 (+)
G18951 NA non-coding downstream 96041 10431957 ~ 10433760 (+)
G18872 NA other upstream 3394 10271146 ~ 10281369 (+)
G18896 NA other upstream 43271 10239900 ~ 10241492 (+)
CI01000001_09435836_09436037 NA other upstream 846700 9435836 ~ 9436373 (+)
G17354 NA other upstream 1044086 9234463 ~ 9240677 (+)
G18937 NA other downstream 139068 10474984 ~ 10476389 (+)
G19039 NA other downstream 515008 10850924 ~ 10853983 (+)
G19314 NA other downstream 1165278 11501194 ~ 11558673 (+)

Expression


Co-expression Network