fzd2 (fzd2,LOC107583044,LOC107658461,LOC107729561,LOC107721960,LOC107564008,LOC107674136)


Basic Information

Item Value
gene id fzd2
gene name fzd2,LOC107583044,LOC107658461,LOC107729561,LOC107721960,LOC107564008,LOC107674136
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 11603674 ~ 11606177 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235982.1
GGAACTTGAAACAGTCTGACGGACAAAGGGGGAAAAGTCACGCAGTCGCTCCTGCGCGCAACAGATATTCCTCTCAGAGTACGTTATGCGATTTACACTAGCTCGCGAGACTTTTTGTTTTCGATTAGCAAATAACATGTCGCCGAAAGCGTAGTTTGCGGACTTGTGTTCAGTGAAAGTTAGGCGGAACTTTCCGGGACAATGCAGACGAGTGGAAGTTTGTGTCTGCTTTTGGCACTGATGTTGCCCTGCTGTTTCGTAGCGTCTGGACAGTATCACGGAGATAGTGGTATAGCCGTCCCCGACCACGGCTTCTGTCAGCCCATAACCATCCCCCTGTGCACGGACATCGCTTACAACCAAACCATAATGCCGAATCTGGTCGGACACTACAACCAAGAGGATGCAGGGCTGGAGGTCCACCAGTTTTACCCGCTGGTCAAGGTACAGTGCTCTCCTGAACTCAAGTTTTTCCTGTGCTCCATGTATGCGCcggtgtgcacggttctggagaAAGCCATCCCGCCATGCCGCTCCATTTGTGAGAGGGCGAAGCACGGCTGCGAGGCCCTCATGAACAAGTTTGGCTTCCAGTGGCCAGAGCGGTTGAGATGCGAACATTTTCCAGTGCTGGGAGACGGACACCTCTGTGTGGGCCAGAATGACTCCATGGCTACAGTGTCGCCCGTTCACATGCCCGTTCCAGGAACGCCCGGCATTCAGCTGTACTCCTCGCCGGACAAGCCCTTCCGCTGCCCATCAATGCTCAAAGTGCCTACGTACCTTAGTTATAAATTCCTGGGCGAGCTGGACTGCGGCGCTCCATGCGAGTCCTCCAGAACACATGGGGCTTATATGTTCTTCACGGACCAGGAGATCGAGTTTGCACGGATTTGGATCCTCATCTGGTCCTCTCTCTGCTGTGCATCCACATTATTCACCGTCACCACGTATTTAGTGGACATGCAGCGTTTTAGATACCCAGAACGTCCGATTATATTCTTGTCCGGCTGCTATACCATGGTTTCCATTGCGTATATCGCTGGTTACTTTCTCGGGGACAAAGTTGTGTGCAACGAGAGCTTTTTTACAGACAGCTATAAAACTATTGTGCAAGGTACAAAGAAAGAAGGGTGCACGATTCTGTTCATGATGCTGTATTTCTTCAGTATGGCGTCTTCAATCTGGTGGGTCATCCTGTCTCTCACTTGGTTCCTGGCGGCTGGCATGAAATGGGGCCATGAGGCTATTGAAGCCAATTCCCAGTACTTTCACCTGGCTGCCTGGGCAGTTCCGGCTGTAAAGACTATTAGCATTCTGGCCATGGGGCAGATCGATGGAGATGTGTTAAGTGGCGTATGCTTTGTGGGCCTGAACAATCTGGATCCCTTGAGGGGCTTCGTGTTGGCCCCTCTCTTCATCTACCTCTTCATTGGCACCTCGTTCCTCCTCGCCGGCTTCGTGTCTCTGTTTCGTATCCGCACCATCATGAAGCACGACGGCACCAAGACCGAGAAGCTGGAGCGCTTGATGGTCCGCATCGGTGTGTTTTCGGTTCTCTACACCGTCCCGGCCACCATCGTCATCGCTTGCTTTTTTTACGAGCAGGCCTTCAGGCAGCACTGGGAGAAGAGCTGGATCAGTACAAACTGTAAAAGCCTGGCCATCCCCTGCCCCATGCAGCCCGCTCCCCACATGACCCCCGACTTCACCGTCTTCATGATCAAGTACCTCATGACTCTCATTGTAGGGATCACCTCGGGATTCTGGATCTGGTCGGGGAAGACGCTGCACTCTTGGAGGAAGTTCTACACGCGTTTGACCAGTAGCGGACAAGGGGAGACCACTGTCTGAAATGGGAGATAGGGATACACATTTTCATGCAATAATGATTTTGGAACTGCAAAAACATAGTAAAGTGCCTTCGATTGTCAGTATTTTGAAAGCTGTTACACTTATTTTTAGACCGGCAGAGACTTTCAAGTGGAAAGAGAAATGGGACGTAAACCACTTGACTTCCCCAAACAAACATGGCCAATTTGATACCAAGTGCAGAAGTGTTTTCCTCCCCCATTCTATTGcccccccctttttttttctcataagcTGCTGGCCATAAAAACTCAACTTGGAAAGTGAGATACCAGCTGGGAATTCAACAAACGACAGAGCAATGAAAGCCATGGGGGGAGGAGACCTGGGAAGCCTGCTATCTAATATACAGCAGCAGGCGGTtgtgttaaatgtaattaaaacattgtacataatattgtaaaaatctgtatttgaacattattatatattagtatttaagcaagtcgttttttttgttactcTGTAGTATCTAGAATTTGTAGCCGCTAGTCTCTCTTTCGTATCTTCTGTACTCATGTTTGCTCTGTTTCAAATTAAAGttgttgtaaataataatactattctttttaaacattatttagttgtggatttaaaagaaaaaaatacctaAAAGTAAACAATCTCTCATT

Function

symbol description
fzd2 Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Acts upstream of or within several processes, including Wnt signaling pathway, calcium modulating pathway; heart development; and sensory epithelium regeneration. Located in plasma membrane. Is expressed in several structures, including cardiovascular system; fin; head; head mesenchyme; and mesoderm. Human ortholog(s) of this gene implicated in omodysplasia 2. Orthologous to human FZD2 (frizzled class receptor 2).

NR:

description
PREDICTED: frizzled-2

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0007199 G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger biological_process
GO:0007223 Wnt signaling pathway, calcium modulating pathway biological_process
GO:0003146 heart jogging biological_process
GO:0016477 cell migration biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0007409 axonogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0007420 brain development biological_process
GO:0061341 non-canonical Wnt signaling pathway involved in heart development biological_process
GO:0001944 vasculature development biological_process
GO:0001947 heart looping biological_process
GO:0032589 neuron projection membrane cellular_component
GO:0045177 apical part of cell cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02235 FZD2; frizzled 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235982.1 True 2504 mRNA 0.48 1 11603674 11606177

Neighbor

gene id symbol gene type direction distance location
ccdc43 LOC107674137,LOC107729438,LOC107583050,LOC107658459,LOC107721961,LOC107564021 coding upstream 9506 11591600 ~ 11594168 (+)
LOC122341817 c1ql1,LOC107729572,LOC107658458,LOC107583048,LOC107674128,LOC103367899,LOC101070426,LOC104923905 coding upstream 88515 11497653 ~ 11515159 (+)
clec19a clec19a,LOC107658453,LOC107583104,LOC107736754 coding upstream 190405 11408037 ~ 11413269 (+)
si:dkey-66i24.8 LOC107658431,LOC107583056,LOC107729444,LOC107732851 coding upstream 236559 11362983 ~ 11367115 (+)
si:dkey-66i24.7 si:dkey-66i24.7,LOC107674138,LOC107732877,LOC107658448,LOC107563999,LOC107729523 coding upstream 257740 11344269 ~ 11345934 (+)
mylk5 LOC107583040,LOC107729567,LOC107658462 coding downstream 10018 11616195 ~ 11629282 (+)
dcaf7 dcaf7,LOC105030232,LOC105898766,LOC100702343 coding downstream 34525 11640702 ~ 11645443 (+)
strada strada,LOC107693497,LOC107658471,LOC107548327,LOC107730762 coding downstream 134102 11740279 ~ 11749928 (+)
snrnp70 LOC107729450,LOC107693498,LOC107658470,LOC107730757,LOC107548330,LOC107583035 coding downstream 148071 11754248 ~ 11762534 (+)
lin7b lin7b,LOC107730776,LOC107548331,LOC107693502,LOC107658474 coding downstream 156495 11762672 ~ 11767501 (+)
G19126 NA non-coding upstream 162336 11440506 ~ 11441338 (+)
G19123 NA non-coding upstream 166477 11436944 ~ 11437197 (+)
G18946 smg1,LOC107729485,LOC107583093,LOC107658410,LOC107732845 non-coding upstream 222884 11380273 ~ 11380790 (+)
G18982 NA non-coding upstream 228273 11371502 ~ 11375401 (+)
G18960 paqr4a,paqr4,LOC107674132 non-coding upstream 309069 11289747 ~ 11294605 (+)
G19184 NA non-coding downstream 106432 11712609 ~ 11719579 (+)
LOC122338225 NA non-coding downstream 228595 11834772 ~ 11835253 (+)
G19208 NA non-coding downstream 361471 11967648 ~ 11974006 (+)
G19255 NA non-coding downstream 466542 12072719 ~ 12073073 (+)
G19257 NA non-coding downstream 468054 12074231 ~ 12074503 (+)
G18949 NA other upstream 233922 11368893 ~ 11369752 (+)
LOC122331261 cox6a2,LOC107564019,LOC107658449,LOC107674165,LOC107583062,LOC103367329 other upstream 267849 11333741 ~ 11335825 (+)
kcna7 LOC106518874,LOC108237811,LOC102213725,LOC102789930,LOC102292646,LOC101488024,LOC100711099,LOC105891650,LOC107729520,LOC107097254,LOC107551170,LOC102237047,LOC107551147,LOC107732850,LOC107729474,LOC107561361,LOC107680852,LOC108434931,LOC108278793 other upstream 761167 10752759 ~ 10842507 (+)
LOC122333995 LOC107561345,LOC107732849,LOC107680844,LOC107729518,LOC107551149,LOC107690331,LOC107732905,LOC107561346,LOC107551141 other upstream 905134 10691890 ~ 10698540 (+)
G18574 LOC107568067,LOC107690317,LOC107733849 other upstream 1500213 10025818 ~ 10103461 (+)
kcnc3a kcnc3a,LOC107693499,LOC107548332,LOC107729449,LOC108427388 other downstream 167023 11773200 ~ 11833924 (+)
syt5a syt5a,LOC107658481,LOC107583026,LOC107730742,LOC107548337,LOC107689676 other downstream 279478 11885655 ~ 11893656 (+)
prr12b prr12b,LOC107689691,LOC107729421,LOC107583015,LOC107658420,LOC107554076,LOC107730729 other downstream 420972 12027149 ~ 12049422 (+)
LOC122342134 LOC107729418,LOC107658494,LOC107689662,LOC107554108,LOC107583010,LOC107730753,LOC100007086 other downstream 486426 12092603 ~ 12100852 (+)
pax10 pax10,LOC107554109,LOC107658497,LOC107730756 other downstream 507871 12114048 ~ 12117939 (+)

Expression


Co-expression Network