cacng3b (cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095,LOC108436978)


Basic Information

Item Value
gene id cacng3b
gene name cacng3b,LOC107710002,LOC107590403,LOC107689612,LOC107719973,LOC107688095,LOC108436978
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13649294 ~ 13683496 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235988.1
GCCAGGGGCGCTGTGCGGGGAGAAACTCAGAGATTAGACGAGAGGCTTCGTCCATTCAGCAGCGCGGAGAGCAGCCAGCGCGCTCCGCTCCGCTCCCTCTGTGGGCGGTGTTTCAAACGAGCGGATTCGCGAGGAACGTGGGAGCTGTCATTGCTGTAAGACACATTTGCGGAGACCAGCATCACCGTTGACAGCAATTACAAGTGCTGGGATTATGTCCGTTTAAACGATCACTTCTTGATATGTGCCTTCATAACATGCTGCTCCACGtgtaatttaaaagaatttttCTTTAGATTCGCCAGATCTGAAGGGGGATTTTGGACAGACACAAAGCTGATCATGAAGTGGGATATTTTACTCCTCTCTTGTGTTTTAGAGAAAAATACCGGATGCATCCGTTGAACGAAGGCATTTCCCGCTGGATTAACAAAGGACAGTGTTTTTGATACTAGTTCTCCGTGCAGAAACTGATTTACTGCCTTTTTCGGGAAACAAAGATGTTCTTGTGAAGTCACAGGCGAAACATCGTGTCATTCGTTTAGCCTAGTGCCTCAATTGCAAAATGCTGTGGTGCTGATTAGAGACTGTTCCTCGACAACAGTTTTTTCACAACCCAGAATGACAAACAAACAGCTCTCCGCTTAAGCGATGGAAACACTGTAAGGTTTCTTGCTGAACTTGAGAAGCGGCAACAGCGACTGCAACAGTCTCGACACCCCAGAAATCGGAACATAATAATGGTATGGGCTTCTGAAGTCGACTGGAGCATGGAGTCCGCGCACCAGGCAGGCTAGGAGGCTTCGCGAGACACGCTAAGAACCCTGTTTTGACCCCCCATCCTGAAATGAGGCAAAATGTTGATGTGTGACAGAGGAGTCCAAATGCTCATCACCACAGTGGGCGCGTTCGCCGCGTTCAGCCTGATGACTATCGCTGTGGGAACGGACTACTGGCTGTACTCACGAGGAGTGTGCCGGGTCAAAAGTAATAACGAGAACGAGACGAGCAGGAAGAACGAGGAAGTCATGACCCACTCCGGACTGTGGAGAACCTGCTGTCTAGAAGGAACATTTCGAGGTGTCTGTAAGAAGATCGACCACTTTCCGGAGGATGCAGATTATGAGCAAGATGCAGCAGAGTATTTACTACGAGCTGTGAGAGCGTCCAGCATCTTCCCAATCATGAGCGTTGGGCTTCTGTTCATGGGAGGTTTGTGTGTGGCTGCCAGTGAGTTTTACAGGAGCAGACACAATGTCATCCTCAGTGCTGGAATCTTCTTTGTCTCTGCTGGCCTAAGTAACATCATTGGCATAATCGTGTACATATCGGCCAATTCGGGCGACCCCGGCCAGAGCGACTCAAAGAAGAGCTACTCGTACGGCTGGTCCTTCTACTTCGGCGCGCTCTCCTTCATAATGGCCGAGATGGTGGGCGTGCTCGCCGTGCACATGTTCATCGAGAAACACCGGAAGCTGCGCGCCAAGTCCCGCACCGAGCTGATCAAGAAGTCGGCCTTCAGTCGCATCCCCAGCTACCGCTACCGATTCCGCCGGCGCTCCAGTTGCCGCTCCAGCGAGCCTGCCTCGCGTGACGCTTCGCCCATGGGCAAGAGCGGCTACACGGGCCCCGCTGCGGCAGACATCTCCATGTACACCCTGTCCAGGGATCCCTCCAAGGCGGCAATGGGTGCCCTGCTCAACTCCGAGAGGGAGTTTTTGCAGGCTCACAACTCCAACGCCAAGGACTTCAAAGATGCGGCCAACAGGAGGACCACTCCAGTCTGAGAGAGTTTAAGCACAGAGGAAGTGCCACAGCCAAGACGTTACAACCACAGACTTGAGCTGGACCCCAGCAGGAGGAAGAATTCACTCGAGGCCTGCAGGGCTATAACCCTCTTtctataacattatatataaatatagatggTAATTGTTAGATCATTGGTGCTTCCTTTTAATCCTCATTTTTCAGTCACTGTTTCTGTCGTTTCACCTGACTCACTCGTCCCTCCCCCTAAGGGCTACTCGAGTAGAATGCTAGTCCTCTCCTCAATGTCATTTGTTCAGCGACTGGAGTTCCTGAAGAGGTAGCCCAGCGAAACTGTGAAGCCCTCTGAGGGGGAGGATTGTAACGCTTCTGACAGACGAACCGAAAGGCTGTCCCGATACTCGCCTTATGCACAGCTCAGTAGCCCATAGCTGGTGAGTGCTGCCTCACACTCACAAGATTGTATACATTGTTGGTTTCTCTCCCGGGTCGGAAAATTGAGCCCACAACTACTAGTGCCACTGTCTCATGCTGATCACCCCACCCCCCCCCACCCCCACACATCCCACGCTGCCCACAAGCTACTTGGCTGGGCTCTGCATGCCATCCACACagttctgttatttatttatatatatttttttatgtttacccCCATTATTTCCATTACGAAAACCCCTGCATAAACTTTTATAACAGGGTAAAAATGCttgttattaaatatgatcTTTTAGCCCACCAAAGTTTTTTGGTATTACATtgttttcattgatttaaaatctTCTGTGATTTACAATGAGGTTTACTGGAGGCCCTTGTGCTTATTAATATGGATATTGTGGTCATTATTATaccgttttttttgtttttcatctgttAGCGAAAGAAAAGCAGTTGGCTGCCAAATGTAGATTTCTTAATTGTctatagttaaaatatttttggataaaatattGTTCATACATTTACCAAAAGCTGTGCATCAAGAGTTTATAAAAATCAGAATGCTATGAAATCAAAAGGAACTGCCCTGAGTACTTGGAGCGTTAACATATCATGAATCGGTAAGCCTCTAAATGGGCTGATGGGATTTTCAGGTTCACGTCTATACACAATgacataacaacaacaaacgcTATGcttataaacatgcatacaacacttctttgaaaatatttactgcTCATTCTATCTACATTAATGCTACATCAATGCTATACTGAACTTaactacaaaatataaatgtatactgtaatTTAGTTGCTtagttaatgttattaatatcaTACTGATGAATATAAACTCCAAGGGCTTTTGGTTTTCAAACAACAAGCATACAAGGGCTTTAAAGAAGTTCAGCCAACAGAGAAAACAACAGATCTGCCCTTAAAAATAGTTAcgttgaaaaaaaagagagaaattctTTACCTGACAATATTCATGTATGCAAAACACATCCAGATGTAATGATATAATGTATACAGTAAGTTTTTCCTTCGCATCTGTCACAACTATTAATCCCCTCGTCAGATAGGTAGAAATGGAAGTAGATCCTGAAACATCTATAATAATGTagttttttcaaaaattcacCTCATTTCAGAGCACCCAAGCGCTGACGTGCATGTACTTTAGCCTCCAGATTCATGCAAGCCAGTCATTCATCtccagttttatttcattcagctTACCGAAGTCATACTAGCGATCTGCCGCCTCACTGGgaatattactgtaaatgttgCCTTTTGTTTGGATCCACTTTATGTTGTGAAATTGTGCTGTTCGGGGTCCAAAACTAAGTGTTTCATATTTGAAGAAGTCCACCGGAGTGCATTGGGCACAGTTGAACAGTTTAACCCTTCAAGTCTCTCTCAGAGCACCTAGTGCCTGTCTACTTCTGCCTACTCCGAGCACCCGGCGCCGGGTCTCTCACTTTCGCTCGCTTGCTCCTTCATCTCCATCACAGCCTCGCATCAGCTCCTCTTACCAGGACTGTTATTGCTCAGCCAATCACATCCATAGAGTCTTAGGCCCTGTCACTCACCACTTAGGCCTGCAACATTGTGTATGTGACCTCTCAATGAAAACAGCAGTCTCAGCTTGAAACATGCTGTAGAAAAAAAGCACACCTTTTAAATACAGTAGTTTACATCAATAAAGATAATAGTCGGAGAGATATTTAaagatttagaaaaataaagtcCGTTTTAAGAATGCCAA

Function

symbol description
cacng3b Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in postsynaptic density membrane. Human ortholog(s) of this gene implicated in childhood absence epilepsy and macular degeneration. Orthologous to human CACNG3 (calcium voltage-gated channel auxiliary subunit gamma 3).

NR:

description
voltage-dependent calcium channel gamma-3 subunit

GO:

id name namespace
GO:0006816 calcium ion transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04868 CACNG3; voltage-dependent calcium channel gamma-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235988.1 True 3993 mRNA 0.46 4 13649294 13683496

Neighbor

gene id symbol gene type direction distance location
prkcbb prkcbb,LOC107601253,LOC107689613,LOC107710001,LOC107590404,LOC107752983,LOC107688094 coding upstream 15767 13532570 ~ 13633527 (+)
smarce1 LOC107590406,LOC107752998,LOC107601252,LOC107709999,LOC107689614 coding upstream 120776 13521215 ~ 13528518 (+)
ca10b ca10b,LOC107753024,LOC107601251,LOC107710000,LOC107689615,LOC107590442,LOC105907875,LOC108442538 coding upstream 128905 13501604 ~ 13520389 (+)
itga3a LOC107601250,LOC107689616,LOC107688090,LOC107709989 coding upstream 147875 13473508 ~ 13501419 (+)
cdk5r1a cdk5r1a,LOC107709992,LOC107689695,LOC107601231,LOC107688088,LOC107753032,LOC108442536 coding upstream 181143 13462052 ~ 13468151 (+)
LOC122339456 LOC107590441,LOC107721518,LOC107654452,LOC107719974,LOC107688138,LOC107601257 coding downstream 35440 13718936 ~ 13764372 (+)
rpusd1 rpusd1,LOC107720093,LOC107654465,LOC107590456,LOC107688151 coding downstream 83695 13767191 ~ 13769945 (+)
traf7 traf7,LOC107601260,LOC107719978,LOC107590399,LOC107654453,LOC107721517 coding downstream 113357 13796853 ~ 13808182 (+)
crlf3 crlf3,LOC107688102,LOC107654479,LOC107721514,LOC107719981 coding downstream 205444 13888940 ~ 13902589 (+)
trnat-cgu NA coding downstream 230127 13913623 ~ 13913694 (+)
G19788 nsfa,LOC107689618,LOC107709994,LOC107601245 non-coding upstream 205716 13409739 ~ 13443578 (+)
G19798 NA non-coding upstream 207145 13441686 ~ 13442149 (+)
LOC122341620 NA non-coding upstream 237376 13408320 ~ 13411918 (+)
G19780 NA non-coding upstream 285564 13362886 ~ 13363730 (+)
G19777 NA non-coding upstream 288959 13359319 ~ 13360335 (+)
G19890 NA non-coding downstream 104337 13787833 ~ 13792555 (+)
G19891 NA non-coding downstream 131857 13815353 ~ 13818222 (+)
LOC122342149 NA non-coding downstream 230430 13913926 ~ 13920269 (+)
G19963 NA non-coding downstream 257120 13940616 ~ 13943491 (+)
G20009 NA non-coding downstream 416677 14100173 ~ 14101904 (+)
si:dkey-204f11.64 LOC105898698 other upstream 534438 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 661381 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 1120491 12519837 ~ 12528803 (+)
G19326 NA other upstream 1135573 12511926 ~ 12513721 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other upstream 1334248 12303364 ~ 12315046 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other downstream 15041 13698537 ~ 13710865 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 312465 13995961 ~ 14002378 (+)
G19973 NA other downstream 365994 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 434971 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 436689 14120185 ~ 14123128 (+)

Expression


Co-expression Network