G18884


Basic Information

Item Value
gene id G18884
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10304931 ~ 10320075 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU21206
TACTCTACTTGTTTGGACCACTCGGGAGGGTTACTAAAAGTCATGAACACACAGTTGGTCAAAATCGTACACATAATGAACATGCTGAATACTGAATGTATCAAAATTTTAATCGCTATTCGCCTGGCAAGATTAAAAGGGCTTATCATGTACAAGGCAGGTGTGGCACTAAAGCGGAAGATTGTTTTCCCTCTATTTAGGACTATAAATGTTTTCTTATTCACGTAGAAGGGATCTAAATCCTCCAGTGGCGTTGCCACCATGCCAGGAGGGATGTCCCCGTAGATGAAGGGCAGACTCTTGCCCGCCTCCAGGTCACCGTTAGGCTTGGGCTTGTTCTCGTCGTCATCGTCGTGGTAGCTGCTGTCTGGCTTAGGAGGCGGCTTGGCTTTCTCCTCAGCAATGCGCTTCTCGATTTCACACAGAGATTCCCTGGTAAAGTATTTGAAGCTGTCAGGTCCTGGCGGTGCAAGAAGGTGTGCAGCCATGTTTTCATCCTGCAGCAACTTCTTCTCCTGTTATGTACCCTCCACGGCAGCCAGTTTATGATTACGTTAGCGGGTATCCAAAAAATCCTCACTGCACTGCAGATGTCGAATAAATTCGGAAGAAATTGCGGATGTCGCCATATTGTTGCTGCTACCCTCCTTCAGTGTGCACCGTTACCCTGCATAATTGATGACTCCCAGCGAAATGTAAGGGAGTGTCGGCCAATAGGTAGCACCAGCTCCACAATAAGCGGCGTTGATTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU21206 True 754 lncRNA 0.47 4 10304931 10320075

Neighbor

gene id symbol gene type direction distance location
CI01000001_10150798_10152858 MIPA coding upstream 151993 10150373 ~ 10152938 (+)
CI01000001_10141190_10146911 PTGES3, PTGES3A coding upstream 156873 10141190 ~ 10148058 (+)
CI01000001_10093069_10104108 RND1B, RND1, RND1A coding upstream 199232 10092902 ~ 10105699 (+)
CI01000001_10072627_10081119 CACNB3, CACNB3A, CACNB3B coding upstream 223752 10072627 ~ 10081179 (+)
CI01000001_09946111_09958162 NA coding upstream 346685 9944120 ~ 9958246 (+)
CI01000001_10321783_10325266 NA coding downstream 1572 10321647 ~ 10325305 (+)
CI01000001_10328133_10329110 NA coding downstream 7965 10328040 ~ 10329110 (+)
CI01000001_10395420_10396473 NA coding downstream 74776 10394851 ~ 10396705 (+)
CI01000001_10420931_10426716 NA coding downstream 100243 10420318 ~ 10427147 (+)
CI01000001_10525795_10530510 WNT1 coding downstream 203187 10523262 ~ 10530543 (+)
G18873 NA non-coding upstream 44217 10223879 ~ 10260714 (+)
G18902 NA non-coding upstream 52277 10252108 ~ 10252654 (+)
G18890 NA non-coding upstream 79403 10224926 ~ 10225528 (+)
G18870 NA non-coding upstream 93485 10211229 ~ 10211446 (+)
G18864 NA non-coding upstream 95114 10202501 ~ 10209817 (+)
G18880 NA non-coding downstream 16812 10336887 ~ 10338149 (+)
G18878 NA non-coding downstream 19962 10340037 ~ 10344121 (+)
G18876 NA non-coding downstream 70613 10390688 ~ 10391598 (+)
G18882 NA non-coding downstream 82155 10402230 ~ 10403910 (+)
G18951 NA non-coding downstream 111882 10431957 ~ 10433760 (+)
G18872 NA other upstream 23562 10271146 ~ 10281369 (+)
G18896 NA other upstream 63439 10239900 ~ 10241492 (+)
CI01000001_09435836_09436037 NA other upstream 866868 9435836 ~ 9436373 (+)
G17354 NA other upstream 1064254 9234463 ~ 9240677 (+)
G18937 NA other downstream 154909 10474984 ~ 10476389 (+)
CI01000001_10538498_10539667 RPS26 other downstream 218397 10538388 ~ 10539846 (+)
G19039 NA other downstream 530849 10850924 ~ 10853983 (+)
G19314 NA other downstream 1181119 11501194 ~ 11558673 (+)

Expression


Co-expression Network