LOC122342172


Basic Information

Item Value
gene id LOC122342172
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13675506 ~ 13678095 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235989.1
gtttttttctattgctaACATCCTTTTGTCCAATTTctagtcacattttcaaaactctaaACACAATTAGCACAACATCCGTTTGTTGTAACCATACCATTAACacaattcatgttgttttcacacaatattcagtcaattaacacatttttaaaatgcttacattttctttttacacaagTTTACCCCATAGCAAAATCATGGAtctttcttatcatttttacaaatgcttaaacacagcatgtcaaaaataaagagcTAATGTTCCAAACTCTAACTATATTGTAAAGCCTCTACTTCTGCAACAACAGCAGCTTAAAAGAgctgataataattattttaattactgataatTAAGAGATAGCTGATTCCAATCTTATTGATTAATTCCAAGTAATGGATTACATGGATTTTTACACTTTCTGGACTggtttttgttcaaaacaacagaaaaactgaaaaagaaagaagatgtcGGGACGAGGAAGAGTTGGACGAGGGAGAGGACAAGGTAGATgagggagaggagaagctgGACCGGGACAAGGTAGAAGAGGTAGGGGTAGAGTAAGAGCTGTTGTTACAGATGAAATAAGAGCCACTATTATTGACCATGTGATAAACCATGGTCTGTCATTGAGAGAGGCAGGTGAAAGAGTCCAGCCCAATCTTAGACGGTCAACTGTGGCATCCATTATCCGAATTTTTCAACAAACCAACAGGTAAGCAATGAATTTCGTGAGGGCCATAATTGCAGTTGTAATGTATCACAATAACTGTTGGCCGCCAAGAGCATGCCATTGTAGGGTGGGTTATTGCtgacaatgcaataaaactcAGAGAAATTCAATCCAGAATTGTACAGGACAACCTGGTATTCCAGAATGTGGAAAGCATCAGCCTGGCTACCATCACTCGAactctgaacaaacacagaattCGAATGAAACAGCTGTACAAAGTGCCCTTTGAAAGAAACAGTGAGCGGGTCAAGGAACTCCGACACCAATATGTCCAGAGAGTTATGGAGTTGGAGGCTAATCAGACAccacataaattcatttatgtagATGAGGCAGGATTTAACCTGGCAAGAACTCGTAGACGAGGAAGAAATCTGATTGGAAAAAGGGCCACTGCTGATGTTCCGGGTCAAAGAGGAGCAAATATCACAATGTGTGCTGCAATCTCAAGTGCTGGTTTGGTCCTGCAGAAAAGCCAGATTGGTCCCTTCAACACAGAGcgccttcttttgtttttagaggACCTCCACCAACAACTGGTACCAGCAGCAGAAAGGGAACAAGTAGGAGGAAACATGAGGACATTTGTGATTGTATGGGACAATGTAGCGTTCCACCATTCACATGCAATCACAAATTGGTTTGCAGCCCATCTGAgaatgatttctctttttcttcctccgTACTCTCCTttcctcaatcctattgaggaATTTTTTTCTGCCTGGAGGTGGAAAGTCTATGATCATAGACCACATGATCAGATGTCCCTCCTGGATGCCATGGAGGCTGGCTGCCGAGATATCTCAGCTGAAGACTGCCAAGGGTGGATAAGGCATGCTAAACGTTTCTATCCCAGATGCATAGCAAGAGAAAATATAAGATGTGATGTCGATGAGAACATGTGGCCAGTTGCTGAAGATCGTATAGATTAgaactttatttctgtttttttttgttttttgtctgttttttttttttttttttaactaaaggcCAAAggcctgtatttttttttttttttggatcactGACAGCAATTTCATTTTGCTAATTTACTTCAGCAATTCTGtcacttttcttttacatttcatcAATTACTGATGAGTCCTCAACTATGCTGTACACATACTGCCCTACAGTAatccacacatacacaaacactggtttccatttttttgtgggGACTCTCAAATTTCTAATCTTGTTTTCTCATGAGGACCAAATAAAGTGTCCCCACAAGGTAAGAATTTACTGGTATTACTAtctttgtggggacattttgtCCCCATAAgatgataaataccaggtacacacacacatgcaatggattaaatgcattaaatggatgTCATATTGTATGTTCTACCCAGGTCAAACCAAAACACGAAGTAATgcagatttttgtaattaattgttagCATTTTGTCAGTCTATGTGTTATGATTGACTATATGTTTCTGTTGGATTGAAAACTAGTGCTAATGTTttgattgaatgattcaattttgaatcaggtttgctgtgttttgatagagttagtatatgtagaaaaaggtactcagcattttgaaatggagagtttgtatttatttaacaaaacatggtTTTGGCCAGAAAATTAACAATTTGGCTAATTGGGTGATGTTAGTGTGTTGCTGTGTTAAGAgtttagaaaaagtattttaagtattggTAAATGCTTGTTAGCaattgaa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235989.1 True 2461 mRNA 0.38 2 13675506 13678095

Neighbor

gene id symbol gene type direction distance location
psmd11a psmd11a,LOC107709998,LOC107688086,LOC107601249,LOC108442534,LOC101476208 coding downstream 214691 13454266 ~ 13460815 (-)
nsfa nsfa,LOC107601245,LOC107709994,LOC107689618,LOC107590408,LOC107688085 coding downstream 222019 13435933 ~ 13453487 (-)
thraa thraa,LOC107601247,LOC107709996,LOC107689619,LOC107688087,LOC107753060 coding downstream 263558 13398956 ~ 13411948 (-)
zgc:163143 LOC107724428,LOC107689697,LOC107601243,LOC107688084,LOC107590412 coding downstream 310895 13358939 ~ 13364611 (-)
LOC122342102 nmrk1,LOC107724440,LOC107601244,LOC107682648 coding downstream 316565 13353993 ~ 13358941 (-)
ndufab1b ndufab1,LOC107601258,LOC107654464,LOC107721527,LOC107580109,LOC107720092,LOC107688150,LOC102794063,LOC107725395 coding upstream 87137 13765232 ~ 13767068 (-)
dctn5 dctn5,LOC107579625,LOC107590401,LOC107719975,LOC105899917 coding upstream 92556 13770651 ~ 13772390 (-)
caskin1 caskin1,LOC107721515,LOC107654476 coding upstream 130212 13808307 ~ 13884781 (-)
suz12a LOC107721513,LOC107601261,LOC107688101,LOC107654477,LOC107719980,LOC107590398 coding upstream 224559 13902654 ~ 13912453 (-)
rab11fip4a rab11fip4a,rab11fip4,LOC107601264,LOC107654480,LOC107719982,LOC107688103,LOC105899936,LOC108436969,LOC107721471 coding upstream 259993 13938088 ~ 13976884 (-)
G19872 NA non-coding downstream 41721 13633559 ~ 13633785 (-)
G19811 NA non-coding downstream 317717 13357579 ~ 13357789 (-)
G19726 NA non-coding downstream 545898 13125521 ~ 13129608 (-)
G19703 ighv6-1 non-coding downstream 584354 13090671 ~ 13091152 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding downstream 594885 13080070 ~ 13080621 (-)
G19947 NA non-coding upstream 219536 13897631 ~ 13898932 (-)
LOC122342150 NA non-coding upstream 239605 13917700 ~ 13930277 (-)
G20029 zgc:86896,LOC107654493,LOC107721506,LOC107590453,LOC107719989,LOC107601274 non-coding upstream 381486 14059581 ~ 14060492 (-)
G20095 LOC107719998,LOC107601286,LOC107688145,LOC107590379 non-coding upstream 541990 14220085 ~ 14221797 (-)
G20202 NA non-coding upstream 707266 14385361 ~ 14388398 (-)
G19676 LOC107690708 other downstream 607316 13005996 ~ 13068190 (-)
G19700 NA other downstream 628012 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 912416 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 995706 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 1331634 12339187 ~ 12343872 (-)
gng13b NA other upstream 107914 13786009 ~ 13792602 (-)
G19933 NA other upstream 127273 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 524835 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 757052 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 1442711 15120806 ~ 15179359 (-)

Expression


Co-expression Network