LOC122342178 (LOC107661000,LOC107567245,LOC798483,LOC107754527,LOC107552447)


Basic Information

Item Value
gene id LOC122342178
gene name LOC107661000,LOC107567245,LOC798483,LOC107754527,LOC107552447
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20444908 ~ 20451990 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235995.1
AAAGAGAGAAACGCTCTCACGCCACGGAGTGGAGCGCGCGCGCAGGCTCACGCGGCGAGGGAGAGCAGAGTCACAAACGCAGTGGATCATATGCCGACACGTTTTACACTTATACACACGAGTATATGGTAGGATAACGcggtgctttaaaaaaaaaaaaaaaaaaaaatcttaattctgTGGCACCACCTGAACTTCGATGTGCtactgttcatttaaattcaaaatgagAAAGATCCTCGCAGTCATTGTGCATTAGATCGAGTTCCCAACGAATTCAGAAACCCTAAATTTCTACTGATATATAAGCTTGATTTGCAACACATCTGTTGTTGTAAACATCTTGGGAATGGATGTGAAGGCTGAGTCTCCTGGTGCAGTGGAGGaagaacagcagcagcaacaatcAGAGCAAGAGAGCAGTCAGCAAGCAGCCCCAGAGTCGGAGCTCACCGCCATCACCTCACAGCCAATCAAGAGCGAGCAACAAGATCCACCGGCCCCCTCTCAGGATGCCCCACCCAGAGACCACCTGACAGTCATCCACGAGAACATGGAAACAaGTAACGGCGTGTGCCCCGATCCTATCGAGAGCTCTCCGAGCGCTTCTTCTCCTCCTCGTCAGCAGCACGCCAAGCCCAACCATGCGCACGCAAACGGGCGAGCGAGGCTGAGCAGCCGGTCCGGGTCAGTGAGTCACGCCGGGTCACCTCGACCGTCGCTCACCCGTCAGCCCAGCGCCGCCACCGACGTCGGAGACGGGTCCAAACCCAACGATTATCTCATTTGGGCTATTCTGGCCTGCCTCTGCCCTGTCTGGCCCATTAACATCGTCGGCTTGACCTTCTCCGTCATgTCTCGAAACAGTCTGCAGCAGGGCAATGTGGACGGTGCGCGTCGTCTTGGCCAGAATGCAAAAATCCTGTCCATCGTGTCATTGGTGGGTGGgattatcatcattattgttACTATCGTCATCAACTGGGGTGtAATACTTAAGACCTGATGGCCGTCACGACAACCAATCCATGATGaccattttcttttcatgtgtCATTCATCTCTCTACATCTGAATGCTCCTGAATgctttttcagttgttttgtacTCTTATCTGAAGACTCTGAAGCTGGATGTTACATTTATCTTCTATCGTGCCAGAACTATCAAAAACAACATGGACTCTTCAGCTCTTCAATGCGTGGAAACCCAGAGCGAAGCGGCAAGgcatgcatgtttttcttttgtttgtttgttttgttttttcagcacAGGACTCATCGTTTGAGATGATGTCAGCGAGGAGACCACACACATGATCTCATTTCATTTGTCATGCACCCCTGAGGATGTGAGGGAGGAAAAGAAGGAGAGGGAATTTGGTTctcgacttttttttttatgcacaagcTGATTTTAGTATCCATCAAGAAAAGCTCAGATTAAAATGTAATCGATTATATAAAACAGCAGATGGCTTCTGAGTTGGCATCCATCCACAGATGAGTCCGATGACCTTAAGAGCTGCTCTAGACTCACTTTTGTCTAGGCTCTCTTTTTTCCTTTGATGGAAGAATGAGCCGCACACCGCGTTTAAACATGggcttttcatttttgattagacATGATGATTGTGTCTCAAAGGACTAAAACGATGTGGAAGAACAGCACAggagcctctctctctctctttttctctctcacagtgTACAGATATTATGATGAGGTTAACGCAGATAAACAAGAAATGGTGAATCAGAGAATCCTACAGATAGAGAAGGAGGGAGAGGTGAGGAGAAAGTGGGAGGGATCGAGACCTAGCCGCAGTCTTTTGTTTCGCACCGATGGAGGGATGGAGAGAGAAGGATAGGGGAGGGGAGGAGGGGGGCAGTAGCTTCAGATGAAAAGATACCCCAGAGATGGCGAGATGTAGGGAATGCAGTAGCATTGAGAGGGATCTGAGctgcttctgattggctgctttcGCGCGCGTGTGAGTCGGAGGAAGCCAATATCGTAAAGCTCGCCAACATGCCCTCCCCTCTTCCTCACAGCTACGCTCAGCTAGATCCTTCAAGGCAAGCATAAAGCAGACCATTAATTTAGTATTGTGTTTTAGCAGTATGAGGCAAAACGATGGTAGAAACAGTCATGTTTTTATACCGTAATGTTTACAGTAGTATCAGACACATTCAGCAGGAACGCTAGGACGTTTCGAACCATGACGAATCATTTTATACAGCTACGAAGTGTTTGTTTGATGGAATGATTTGTGTTGCTCAACAGAATGATACCTGAATCATTCCTGGTCAGGCCACACCGACTGTGCCAAAATTCAGACTCTGCCAAGAGTCCAGCTTAGGGGGGCATGTTTGTGActgaaacaggaaatgagagCATGGATGCATTTTTAAGAAGGCATATATGTAGGGATGcactgatattaaaattctaTCCCATACTGATAAGCCATTAATTGTATTCTTGTTGGCTTACAAATTCTTGTACTAGCTTACAAATGGctagtattaaaaatgtatgcttttttgtctatacaaaagcacaaaataaatgaaacacaaaaaattttatttaggcttgaaaaaagtgctttaattaactttttaaagattacatttaacagtgttattgaattattcatgtttttgaagatttatgagataaaaaataGCATGCAATTTTACTAATTTTCAAACTAAAATTCCAAAATTGACTGAtacatttacaagaaaatacttatttaagacttatttaaattaaaaaagaagatTTGGACATGCAcaagcaaatatataatatcaactAAATAATATCCAATATTgccaaaatgatacatttaaatgctacaGGCTgataatcaaatgtaaaaactgtaaaaatttaATACTGACTgaccaatatattttattccaaCCAACtggtaaatatttgtaaaaaataaagaaatagcaggcaaaaaaatctaatactGACTGACCAATAAATTGATTGTAAAAAGATTGTGTAAAAGATCATAATCATATTGTGCATCTCTACATATGAAGTTCTTTTATAGATTAAATTACAAACCCCTCATTTTCATGGCTTCAGGTCTCTTGCATGCAGAATGTGACTCTGTTTCATTGATGTTTACAGCTTTTTGATGGTGATGGGGGCACTTGTTAACTCTCTGAAATCAAGTATTctt
>XM_043235996.1
AAAGAGAGAAACGCTCTCACGCCACGGAGTGGAGCGCGCGCGCAGGCTCACGCGGCGAGGGAGAGCAGAGTCACAAACGCAGTGGATCATATGCCGACACGTTTTACACTTATACACACGAGTATATGGTAGGATAACGcggtgctttaaaaaaaaaaaaaaaaaaaaatcttaattctgTGGCACCACCTGAACTTCGATGTGCtactgttcatttaaattcaaaatgagAAAGATCCTCGCAGTCATTGTGCATTAGATCGAGGTGAGTTGACTTTGGGTCCGCATGCGTGCTCCTGCTTTATTACGGTCAGTTGGGTTCTCGCATCAGCGCATCAGTCGTGGCTCGGCTCCTGTGGTTCCCAACGAATTCAGAAACCCTAAATTTCTACTGATATATAAGCTTGATTTGCAACACATCTGTTGTTGTAAACATCTTGGGAATGGATGTGAAGGCTGAGTCTCCTGGTGCAGTGGAGGaagaacagcagcagcaacaatcAGAGCAAGAGAGCAGTCAGCAAGCAGCCCCAGAGTCGGAGCTCACCGCCATCACCTCACAGCCAATCAAGAGCGAGCAACAAGATCCACCGGCCCCCTCTCAGGATGCCCCACCCAGAGACCACCTGACAGTCATCCACGAGAACATGGAAACAaGTAACGGCGTGTGCCCCGATCCTATCGAGAGCTCTCCGAGCGCTTCTTCTCCTCCTCGTCAGCAGCACGCCAAGCCCAACCATGCGCACGCAAACGGGCGAGCGAGGCTGAGCAGCCGGTCCGGGTCAGTGAGTCACGCCGGGTCACCTCGACCGTCGCTCACCCGTCAGCCCAGCGCCGCCACCGACGTCGGAGACGGGTCCAAACCCAACGATTATCTCATTTGGGCTATTCTGGCCTGCCTCTGCCCTGTCTGGCCCATTAACATCGTCGGCTTGACCTTCTCCGTCATgTCTCGAAACAGTCTGCAGCAGGGCAATGTGGACGGTGCGCGTCGTCTTGGCCAGAATGCAAAAATCCTGTCCATCGTGTCATTGGTGGGTGGgattatcatcattattgttACTATCGTCATCAACTGGGGTGtAATACTTAAGACCTGATGGCCGTCACGACAACCAATCCATGATGaccattttcttttcatgtgtCATTCATCTCTCTACATCTGAATGCTCCTGAATgctttttcagttgttttgtacTCTTATCTGAAGACTCTGAAGCTGGATGTTACATTTATCTTCTATCGTGCCAGAACTATCAAAAACAACATGGACTCTTCAGCTCTTCAATGCGTGGAAACCCAGAGCGAAGCGGCAAGgcatgcatgtttttcttttgtttgtttgttttgttttttcagcacAGGACTCATCGTTTGAGATGATGTCAGCGAGGAGACCACACACATGATCTCATTTCATTTGTCATGCACCCCTGAGGATGTGAGGGAGGAAAAGAAGGAGAGGGAATTTGGTTctcgacttttttttttatgcacaagcTGATTTTAGTATCCATCAAGAAAAGCTCAGATTAAAATGTAATCGATTATATAAAACAGCAGATGGCTTCTGAGTTGGCATCCATCCACAGATGAGTCCGATGACCTTAAGAGCTGCTCTAGACTCACTTTTGTCTAGGCTCTCTTTTTTCCTTTGATGGAAGAATGAGCCGCACACCGCGTTTAAACATGggcttttcatttttgattagacATGATGATTGTGTCTCAAAGGACTAAAACGATGTGGAAGAACAGCACAggagcctctctctctctctttttctctctcacagtgTACAGATATTATGATGAGGTTAACGCAGATAAACAAGAAATGGTGAATCAGAGAATCCTACAGATAGAGAAGGAGGGAGAGGTGAGGAGAAAGTGGGAGGGATCGAGACCTAGCCGCAGTCTTTTGTTTCGCACCGATGGAGGGATGGAGAGAGAAGGATAGGGGAGGGGAGGAGGGGGGCAGTAGCTTCAGATGAAAAGATACCCCAGAGATGGCGAGATGTAGGGAATGCAGTAGCATTGAGAGGGATCTGAGctgcttctgattggctgctttcGCGCGCGTGTGAGTCGGAGGAAGCCAATATCGTAAAGCTCGCCAACATGCCCTCCCCTCTTCCTCACAGCTACGCTCAGCTAGATCCTTCAAGGCAAGCATAAAGCAGACCATTAATTTAGTATTGTGTTTTAGCAGTATGAGGCAAAACGATGGTAGAAACAGTCATGTTTTTATACCGTAATGTTTACAGTAGTATCAGACACATTCAGCAGGAACGCTAGGACGTTTCGAACCATGACGAATCATTTTATACAGCTACGAAGTGTTTGTTTGATGGAATGATTTGTGTTGCTCAACAGAATGATACCTGAATCATTCCTGGTCAGGCCACACCGACTGTGCCAAAATTCAGACTCTGCCAAGAGTCCAGCTTAGGGGGGCATGTTTGTGActgaaacaggaaatgagagCATGGATGCATTTTTAAGAAGGCATATATGTAGGGATGcactgatattaaaattctaTCCCATACTGATAAGCCATTAATTGTATTCTTGTTGGCTTACAAATTCTTGTACTAGCTTACAAATGGctagtattaaaaatgtatgcttttttgtctatacaaaagcacaaaataaatgaaacacaaaaaattttatttaggcttgaaaaaagtgctttaattaactttttaaagattacatttaacagtgttattgaattattcatgtttttgaagatttatgagataaaaaataGCATGCAATTTTACTAATTTTCAAACTAAAATTCCAAAATTGACTGAtacatttacaagaaaatacttatttaagacttatttaaattaaaaaagaagatTTGGACATGCAcaagcaaatatataatatcaactAAATAATATCCAATATTgccaaaatgatacatttaaatgctacaGGCTgataatcaaatgtaaaaactgtaaaaatttaATACTGACTgaccaatatattttattccaaCCAACtggtaaatatttgtaaaaaataaagaaatagcaggcaaaaaaatctaatactGACTGACCAATAAATTGATTGTAAAAAGATTGTGTAAAAGATCATAATCATATTGTGCATCTCTACATATGAAGTTCTTTTATAGATTAAATTACAAACCCCTCATTTTCATGGCTTCAGGTCTCTTGCATGCAGAATGTGACTCTGTTTCATTGATGTTTACAGCTTTTTGATGGTGATGGGGGCACTTGTTAACTCTCTGAAATCAAGTATTctt

Function

NR:

description
PREDICTED: tumor suppressor candidate 5 homolog isoform X2

GO: NA

KEGG:

id description
K23897 PRRT2; proline-rich transmembrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235995.1 False 3208 mRNA 0.42 5 20444908 20451990
XM_043235996.1 True 3302 mRNA 0.43 5 20444908 20451990

Neighbor

gene id symbol gene type direction distance location
LOC122341693 LOC107739398,LOC107754510,LOC107661018,LOC107689062 coding upstream 1452 20430369 ~ 20443456 (+)
dhrs7b dhrs7b,LOC107745957,LOC107755107,LOC107689054,LOC107661099 coding upstream 58074 20382272 ~ 20386834 (+)
cramp1 cramp1,LOC107661046,LOC107745824,LOC107689053 coding upstream 62769 20367445 ~ 20382139 (+)
nme3 nme3,LOC107661191,LOC107689099,LOC107567334 coding upstream 110858 20331334 ~ 20334050 (+)
mrps34 mrps34,LOC107567325 coding upstream 113678 20328156 ~ 20331230 (+)
zgc:66443 LOC107567227,LOC107754585,LOC107660992,LOC107552485,LOC107689065,LOC107739396 coding downstream 5148 20457138 ~ 20460351 (+)
zgc:66474 LOC107754539,LOC107567164,LOC107660968 coding downstream 9385 20461375 ~ 20469846 (+)
LOC122341263 LOC107689064 coding downstream 18991 20470981 ~ 20473411 (+)
si:dkey-93n13.2 LOC107754579,LOC107567217,LOC107661267,LOC107689100,LOC107739413,LOC107552446 coding downstream 22195 20474185 ~ 20477233 (+)
LOC122342097 LOC107660919,LOC107567207,LOC107754572,LOC107689067,LOC107552480,LOC107735422,LOC107739406 coding downstream 26696 20478686 ~ 20482737 (+)
G21671 NA non-coding upstream 36581 20407792 ~ 20408327 (+)
G21669 NA non-coding upstream 51007 20393561 ~ 20393901 (+)
G21660 NA non-coding upstream 99552 20339891 ~ 20345356 (+)
G21661 NA non-coding upstream 102612 20341072 ~ 20342296 (+)
G21655 NA non-coding upstream 130764 20230015 ~ 20314144 (+)
G21687 NA non-coding downstream 28341 20480331 ~ 20518038 (+)
LOC122337901 NA non-coding downstream 268583 20720573 ~ 20726559 (+)
G21732 rnd2,LOC107708553,LOC107552458,LOC107754744,LOC107567027 non-coding downstream 271468 20723458 ~ 20724700 (+)
G21733 NA non-coding downstream 285987 20737977 ~ 20738225 (+)
G21739 NA non-coding downstream 318667 20770657 ~ 20770881 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 249187 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 331410 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 375655 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1041732 19399408 ~ 19403176 (+)
G21213 NA other upstream 1152567 19291445 ~ 19292341 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 430208 20882198 ~ 20956574 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 843712 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 1185753 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 1523262 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 1524519 21976509 ~ 22025911 (+)

Expression


Co-expression Network