LOC122330682


Basic Information

Item Value
gene id LOC122330682
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 1383248 ~ 1384894 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006248052.1
GCTTCGACTTTATCTTTTTGGATCCTGGAAATTTCCACCGAGCTCTTTCCTCCTGTGGGCGGAGCTGATGGAGAGCACATAAATCATCTGAAACTGAAACTATCCTTTAAACAGAGAGTCTGAAGATCAGCATCAAGGAAGAACAGGTCGACCGAGGACTATGGCCGAGAACCTGCGTCATAGATGTAACGATGCGGCTCAATCTTATATTAACCAGAGAAACTCACATGACTGGACCGCATGCGGTAAGCTATATAAACAGGCCACAGATCATATGAGAAATTATGTTCTAAACATGTTCtctcat
>XR_006248053.1
GCTTCGACTTTATCTTTTTGGATCCTGGAAATTTCCACCGAGCTCTTTCCTCCTGTGGGCGGAGCTGATGGAGAGCACATAAATCATCTGAAACTGAAACTATCCTTTAAACAGAGAGTCTGAAGATCAGCATCAAGGAAGAACAGGTCGACCGAGGACTATGGCCGAGAACCTGCGTCATAGATGTAACGATGCGGCTCAATCTTATATTAACCAGAGAAACTCACATGACTGGACCGCATGCGaAGCAGCACCTGACTGT

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006248052.1 True 307 lncRNA 0.44 3 1383248 1384764
XR_006248053.1 False 262 lncRNA 0.47 4 1383248 1384894

Neighbor

gene id symbol gene type direction distance location
LOC122329966 NA coding upstream 3222 1376449 ~ 1380026 (+)
LOC122332730 NA coding upstream 8958 1372532 ~ 1374290 (+)
LOC122329817 LOC100537134 coding upstream 148344 1230001 ~ 1234904 (+)
sox10 sox10,LOC107674484,LOC107711804,LOC107563722,LOC107727045,LOC107679477 coding upstream 158331 1217521 ~ 1224917 (+)
kcnj4 kcnj4,LOC107711802,LOC107679476,LOC107727044 coding upstream 185210 1188018 ~ 1198038 (+)
LOC122330340 NA coding downstream 2590 1387484 ~ 1389699 (+)
LOC122330593 polr2f,LOC107727050 coding downstream 30723 1415617 ~ 1418312 (+)
LOC122330185 micall1,LOC107727039,LOC107674481,LOC107711806,LOC107563760 coding downstream 65344 1450238 ~ 1453084 (+)
LOC122329871 NA coding downstream 72056 1456950 ~ 1463253 (+)
LOC122329679 NA coding downstream 123599 1508493 ~ 1516411 (+)
LOC122330723 NA non-coding upstream 102077 1279263 ~ 1281171 (+)
G15929 NA non-coding upstream 142201 1240346 ~ 1241047 (+)
G15927 NA non-coding upstream 167643 1215316 ~ 1215605 (+)
G15925 NA non-coding upstream 169620 1213325 ~ 1213628 (+)
G15911 NA non-coding upstream 230020 1152825 ~ 1153228 (+)
G15967 NA non-coding downstream 29321 1414215 ~ 1415199 (+)
G15972 NA non-coding downstream 56365 1441259 ~ 1441742 (+)
G15944 NA non-coding downstream 100677 1485571 ~ 1490779 (+)
G16004 NA non-coding downstream 230266 1615160 ~ 1615529 (+)
G16008 NA non-coding downstream 304148 1689042 ~ 1704676 (+)
G15939 NA other upstream 91684 1290969 ~ 1291564 (+)
LOC122330066 NA other upstream 332097 1047012 ~ 1051151 (+)
LOC122330135 NA other upstream 373817 1005983 ~ 1009431 (+)
LOC122330463 NA other upstream 607714 754430 ~ 775534 (+)
LOC122330407 NA other upstream 747009 625364 ~ 636239 (+)
G15955 NA other downstream 5845 1390739 ~ 1392850 (+)
LOC122330032 LOC107674481,LOC107727039,LOC107711806,LOC107563760 other downstream 10953 1395847 ~ 1408926 (+)
G16003 pick1,LOC107734822,LOC106607154 other downstream 174493 1559387 ~ 1649494 (+)
G16002 pick1,LOC107734822,LOC107734770 other downstream 234418 1619312 ~ 1865229 (+)
trnar-ccu plbd1,LOC107563730 other downstream 236029 1620923 ~ 1623394 (+)

Expression


Co-expression Network