LOC122333245


Basic Information

Item Value
gene id LOC122333245
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15879468 ~ 15880669 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006248599.1
CGCCGGTCGACACTTTTGACGCTTCTGGCATATTCAGCACTATGCTCCACGAGACTTCAGTCGttacttttttttgaaaacgaCCAAAGACACCAAATGAGAATTGCCTAGCAGTTGTGTTGGAAGCTGTTTCTAATGTCCAGCTCTAGTTTACTGGGAAACAATTGAATACAAGAAGACCATGGTAGGTTGGTTCATTTTTTTAGGTGGCAAACTAGAAGAAACCGTATCACAAACCCTGTTATtgcatgaacacacactctATGTCGtactttattatttctatatgaaataataaaaaaaatctttaagaTAAATCAATAGACTTGTAAGCGAAGATTATTTActaattttctaaaatgttttattattgttttaaaatatcagaaagAGCTTATACGTCTtgattttattaagttattacattgtaaaacagtcagatattaatatagtaacatggcagtttatttattttttatagttatcaGAGGAGAAAAAACATGTCGTCCACCTTAATCTTGTTAAAccattttagtgtatttttacatttgacataGCACATGACACAAAGTGAATAAATCAGGAATAGCTCAGGGTCCAGTAAATATCACAACCATCCATCCAAAACCAAACAATCAAGACcaattcaaaaatacagtgtaaaaatgtaatataaaaaaaaatatttaggtaattatttttttttttttt

Function

GO:

id name namespace
GO:0000098 sulfur amino acid catabolic process biological_process
GO:0009063 cellular amino acid catabolic process biological_process
GO:0042219 cellular modified amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0044273 sulfur compound catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0030328 prenylcysteine catabolic process biological_process
GO:0030329 prenylcysteine metabolic process biological_process
GO:0016054 organic acid catabolic process biological_process

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006248599.1 True 711 lncRNA 0.31 2 15879468 15880669

Neighbor

gene id symbol gene type direction distance location
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding upstream 32502 15835083 ~ 15846966 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding upstream 50485 15823776 ~ 15828983 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding upstream 56033 15819654 ~ 15823435 (+)
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 182094 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 261404 15608385 ~ 15618064 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding downstream 270184 16150853 ~ 16175090 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 331698 16212367 ~ 16221215 (+)
chst12a chst12,chst12a,LOC107703401,LOC107758335,LOC107581708,LOC107674724 coding downstream 341531 16222200 ~ 16229178 (+)
lfng lfng,LOC107703400,LOC107674646,LOC107758333 coding downstream 412553 16293222 ~ 16301224 (+)
snx8a snx8,LOC107758331,LOC107592787,LOC107674736,LOC107703396 coding downstream 479243 16359912 ~ 16369501 (+)
G20469 NA non-coding upstream 139 15879130 ~ 15879329 (+)
G20468 NA non-coding upstream 1042 15878189 ~ 15878426 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding upstream 3509 15874033 ~ 15875959 (+)
G20465 NA non-coding upstream 5543 15872802 ~ 15873925 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding upstream 14506 15862013 ~ 15864962 (+)
G20647 NA non-coding downstream 411936 16292605 ~ 16292806 (+)
G20656 NA non-coding downstream 427129 16307798 ~ 16308018 (+)
LOC122342129 NA non-coding downstream 715623 16596292 ~ 16597215 (+)
G20744 NA non-coding downstream 906163 16786832 ~ 16787050 (+)
G20798 NA non-coding downstream 1108543 16989212 ~ 17052645 (+)
fscn1a fscn1a,LOC107703419,LOC107742378,LOC107581720,LOC107674660,LOC107720060 other upstream 135274 15706936 ~ 15744194 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 599355 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 694595 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 710210 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1207900 14664919 ~ 14671568 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 298951 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 810034 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 889876 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1232379 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 1257261 17137930 ~ 17200630 (+)

Expression


Co-expression Network