LOC122334400


Basic Information

Item Value
gene id LOC122334400
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 15720247 ~ 15721303 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006248755.1
ttgaacttcacaatatacaaaaatgtttttgatgtttgtttgtagTATTTTCTTTAGGTTACAGTTGGCTTTTAAAAGCAGCAATGTCCCTCGTTCAtttcttcagtgaaaaactAAAGGTTTGCCTCCAAATATGCCACTATGAGTAAGAAGGAAGTggttttaaataatgacagcgAGGTCATATCCATATATAGTCAGCCTTGGCAGGGCAATGATGACTGATGATGTCTCAACTTTAGATAGCTGATTTCATCTCTCTGTGTTTTGCCATGTTCTCTCAACATCATTTGCTCACATTGCACTTTCACACACTAACGCTTGACACAATCCATTAAGCCAGATATACTATCAACAGTCTCTCGTTCTTTTTCAAAATCTCTCTCACTTTTACTCTTAATCTACCgctcccaaacacacacacacacacacattctcataCTCACACCGCCACTCTCATGCTCGGCCCCTCCTTACACTGTTTAGACAGCAAACAATTACGAGCAGAGAGCTGGGGGGTGGAGTTTAGCTTTATCTTCAACTTCTCAGCCTCCATTTATGGAGAGGACTAGCAGGTAGCGATTGCCAAACTTAGTCATCAAAGCGTGCGTCTCATTCATTGCACACTCAGCTTGTGTTTTGCTTGGGCTCTGAAGACGTGCAACTCTTGCCTTCGGCTGAGATCTTTAAAGGAGTTCGGGGTCACTTCCTTCAGCTGGATTTGCGAGAGAAAATGGCATTGTGCTGTAGCAGCAGGAACCATATATCTTCGGGACTGACTTGTGGATGTAGCCACAGCAGCTTTTCCTTTGGTTTATGAGGTGGTAAATTCCTCTTAGCCGATTATTATTTGTTGCTTATTGACTGAGCCAGTGTCGTGTTTAAGATTGAGGGACACAAATGTTTTCCCCTCTCCCTTTggttaagaaaaagaaagcgaCCACAGTTCAAGATCCTGTCAATAAAGATCCTGTCTGAATTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006248755.1 True 983 lncRNA 0.42 2 15720247 15721303

Neighbor

gene id symbol gene type direction distance location
tnrc18 LOC107581723,LOC107674629,LOC107720058,LOC107703323 coding upstream 22873 15639017 ~ 15697374 (+)
slc29a4a slc29a4,LOC107581724,LOC107737679,LOC107703421,LOC107720057,LOC108430547 coding upstream 102183 15608385 ~ 15618064 (+)
cpsf4 LOC107738050,LOC107703345,LOC107578701,LOC107720053,LOC107674613 coding upstream 121535 15595214 ~ 15598712 (+)
bud31 bud31,LOC107737741,LOC107720055 coding upstream 125174 15593873 ~ 15595073 (+)
smcr8a LOC107703424,LOC107737714,LOC107581729,LOC107674654,LOC107591684 coding upstream 136846 15578600 ~ 15583401 (+)
arpc1a arpc1a,LOC107720063,LOC107703414,LOC107674705,LOC107591778 coding downstream 98351 15819654 ~ 15823435 (+)
arpc1b LOC107747539,LOC107581715,LOC107703415,LOC107591785,LOC107674599,LOC107720102 coding downstream 102473 15823776 ~ 15828983 (+)
mmd2a mmd2a,mmd2,LOC107748164,LOC107674702,LOC107581716,LOC107720066 coding downstream 113780 15835083 ~ 15846966 (+)
card11 card11,LOC107753502,LOC107758337,LOC107674584,LOC107703320 coding downstream 429550 16150853 ~ 16175090 (+)
eif3ba eif3ba,eif3b,LOC107703402,LOC107674692 coding downstream 491064 16212367 ~ 16221215 (+)
G20415 NA non-coding upstream 131438 15587212 ~ 15588809 (+)
G20269 NA non-coding upstream 581347 15129681 ~ 15138900 (+)
G20188 NA non-coding upstream 727210 14990229 ~ 14993037 (+)
G20179 NA non-coding upstream 730255 14972299 ~ 14989992 (+)
G20183 NA non-coding upstream 748586 14971012 ~ 14971661 (+)
G20452 LOC107674632,LOC107720067,LOC107591813,LOC107748300 non-coding downstream 140710 15862013 ~ 15864962 (+)
G20465 NA non-coding downstream 151499 15872802 ~ 15873925 (+)
G20466 LOC107581712,LOC107748668,LOC107591821,LOC107748444,LOC107703406,LOC107703407 non-coding downstream 152730 15874033 ~ 15875959 (+)
G20468 NA non-coding downstream 156886 15878189 ~ 15878426 (+)
G20469 NA non-coding downstream 157827 15879130 ~ 15879329 (+)
zgc:165423 LOC107738133,LOC107654537,LOC107581795 other upstream 440134 15269800 ~ 15280113 (+)
G20286 LOC107581737,LOC107654534 other upstream 535374 15149112 ~ 15184873 (+)
G20295 plcd3,plcd3a,LOC107674588,LOC107581738,LOC107654535,LOC107591554,LOC108432051 other upstream 550989 15168338 ~ 15169258 (+)
G20172 rps11,LOC107674708 other upstream 1048679 14664919 ~ 14671568 (+)
G20167 NA other upstream 1097389 14618994 ~ 14622858 (+)
gna12a gna12,gna12a,LOC107703403,LOC107753491,LOC107674729,LOC107758336 other downstream 458317 16179620 ~ 16207846 (+)
LOC122331507 psmg3,LOC107703392 other downstream 969400 16690703 ~ 16699482 (+)
micall2a micall2,micall2a,LOC107703317,LOC107745593,LOC107568921,LOC107674716 other downstream 1049242 16770545 ~ 16784811 (+)
nsmce1 nsmce1 other downstream 1391745 17113048 ~ 17117041 (+)
LOC122341316 NA other downstream 1416627 17137930 ~ 17200630 (+)

Expression


Co-expression Network