LOC122335640


Basic Information

Item Value
gene id LOC122335640
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28319710 ~ 28320156 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006248988.1
TTGCGATTTTAGGCCCTGTCATTTCAATGATCTTAAGAGCCCGGAGaTATCTGTGATCAGCAACCCTTCCACGAATCACCGTCCTGCAGACATACCTCCAcaatacaatgaaatataaataaatataataaaaagggAGCCAGTAATGTGATCCGGCAGTGAGCTGCTTTCCAGTTTCCCAATGATTGTTATTTGTAacaatgtgtatgtgtatttaagacgctaataaaaaaaaaatatcctga

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006248988.1 True 245 lncRNA 0.38 2 28319710 28320156

Neighbor

gene id symbol gene type direction distance location
LOC122341391 LOC107758342 coding upstream 1 28316600 ~ 28319709 (+)
LOC122334574 LOC107562041,LOC107676321,LOC107562032 coding upstream 247133 27574258 ~ 28072577 (+)
LOC122334736 LOC107702828 coding upstream 251611 28036420 ~ 28068099 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding upstream 367253 27951751 ~ 27952457 (+)
LOC122335347 LOC107569407,LOC107688685,LOC107571108 coding upstream 589818 27728274 ~ 27729892 (+)
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding downstream 332937 28653093 ~ 28658489 (+)
LOC122341396 NA coding downstream 391547 28711703 ~ 28714513 (+)
LOC122341397 LOC107556593 coding downstream 400391 28720547 ~ 28721944 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 415843 28735999 ~ 28737619 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding downstream 465376 28785532 ~ 28789067 (+)
G23953 NA non-coding upstream 84174 28227075 ~ 28235536 (+)
LOC122335654 NA non-coding upstream 283552 28034400 ~ 28036158 (+)
G23931 NA non-coding upstream 374494 27942182 ~ 27945216 (+)
G23924 NA non-coding upstream 513377 27804611 ~ 27806333 (+)
G23878 NA non-coding upstream 519481 27734542 ~ 27800229 (+)
G23964 NA non-coding downstream 8309 28328465 ~ 28329411 (+)
LOC122335662 NA non-coding downstream 73585 28393741 ~ 28394538 (+)
G24132 NA non-coding downstream 383874 28704030 ~ 28705144 (+)
G24138 NA non-coding downstream 388624 28708780 ~ 28715865 (+)
G24139 NA non-coding downstream 389750 28709906 ~ 28716193 (+)
LOC122335546 NA other upstream 1037304 27281827 ~ 27282406 (+)
G23695 NA other upstream 1472353 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 1518309 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 1546807 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 1613979 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 195487 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 272648 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 386875 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 478158 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 523658 28843814 ~ 28846375 (+)

Expression


Co-expression Network