LOC122335654


Basic Information

Item Value
gene id LOC122335654
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28034400 ~ 28036158 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006248990.1
tctttacttcTTGTAAACCTGTGTGGAACACTCAACGCCGGAGACACTGAGGCGAACAGAAGAGTTGGACTCTATAATAATTAACGGCTCATTGCAGTGAAACGCTTAATGAGATGTCGCTGAGGTTTCTTCTCCAGAGCTGAGTGGTCTCCACCTCTACGTACTCCTCCACCTTGAAAACCTATAAACCTCACTGCGCTGGGTCTCAGTTAGATTTTtattggagatttcttgaagacttcttgccaATGACTACAGCAAACACTCCTGCTTTACTAAGAATCTCCTGGTGTCTtctaaaaagaagctaaaaaactTTCCAATGTTGGttaattgttgtcttttttttttaaagggtcgTTGGGAGCGAGGACAGAGGAGCGAGAAGCTgagctgttttctatgtgaaatgtattttagacTATGCATATAGAAACATTATGCCGAATAATTTTAGTCGAGAGCTTCACTTTTCTTATGTTTTGTAAAGTTGAAAACAAGCAAGCCGTAATGTTCATGTGATCAAACCTTGCTTACAGCAGGCAGAATACAAGTTATGATGTGTTTTAcaagaaattaagtttttagaTACTTGTGCTTCATAAAGTAAATGTACATGTTATAATAACCATGTTTAAATTATTCCAAATAAACTTTGCTTATAAGCGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006248990.1 True 671 lncRNA 0.37 2 28034400 28036158

Neighbor

gene id symbol gene type direction distance location
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding upstream 81943 27951751 ~ 27952457 (+)
LOC122335347 LOC107569407,LOC107688685,LOC107571108 coding upstream 304508 27728274 ~ 27729892 (+)
LOC122334614 LOC107562032 coding upstream 477870 27533844 ~ 27556530 (+)
LOC122334777 NA coding upstream 546043 27475325 ~ 27488357 (+)
rasd4 zgc:153845,LOC103035404,LOC108435855,LOC103354899 coding upstream 574261 27458791 ~ 27460139 (+)
LOC122334736 LOC107702828 coding downstream 262 28036420 ~ 28068099 (+)
LOC122341391 LOC107758342 coding downstream 280442 28316600 ~ 28319709 (+)
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding downstream 616935 28653093 ~ 28658489 (+)
LOC122341396 NA coding downstream 675545 28711703 ~ 28714513 (+)
LOC122341397 LOC107556593 coding downstream 684389 28720547 ~ 28721944 (+)
G23931 NA non-coding upstream 89184 27942182 ~ 27945216 (+)
G23873 LOC107732158,LOC107562041,LOC107731674,LOC107573385,LOC107562032,LOC107710688,LOC107726817,LOC107676321 non-coding upstream 218211 27704177 ~ 27816189 (+)
G23924 NA non-coding upstream 228067 27804611 ~ 27806333 (+)
G23878 NA non-coding upstream 234171 27734542 ~ 27800229 (+)
G23915 NA non-coding upstream 314744 27719185 ~ 27719656 (+)
G23953 NA non-coding downstream 190917 28227075 ~ 28235536 (+)
LOC122335640 NA non-coding downstream 283552 28319710 ~ 28320156 (+)
G23964 NA non-coding downstream 292307 28328465 ~ 28329411 (+)
LOC122335662 NA non-coding downstream 357583 28393741 ~ 28394538 (+)
G24132 NA non-coding downstream 667872 28704030 ~ 28705144 (+)
LOC122335546 NA other upstream 751994 27281827 ~ 27282406 (+)
G23695 NA other upstream 1187043 26846723 ~ 26847357 (+)
srsf2b srsf2b,srsf2,LOC104923358,LOC107755521,LOC108430244 other upstream 1232999 26798431 ~ 26801401 (+)
ubald2 ubald2,LOC107548684 other upstream 1261497 26759063 ~ 26772903 (+)
pitpnc1a pitpnc1,LOC107665814,LOC107691236,LOC107752702,LOC107743029,LOC108412868,LOC108274028,LOC107376579,LOC106903613 other upstream 1328669 26650829 ~ 26705731 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other downstream 479485 28515643 ~ 28560324 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other downstream 556646 28592804 ~ 28650650 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other downstream 670873 28707031 ~ 28708608 (+)
LOC122341400 NA other downstream 762156 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 807656 28843814 ~ 28846375 (+)

Expression


Co-expression Network