LOC122335688


Basic Information

Item Value
gene id LOC122335688
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28718032 ~ 28719109 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006248999.1
CTAACTGGATAATAAACTGACTATCAGTTATGTGTCGTTAATGATATCTACCTTGTAAGTGCACTTACCCTGCACATAACCCGTGCAGTTGCTAAATGTTCACTAATAAGTTTTTGGAGATAACCTGCCAAATTTTAATTGCCTCTGAATATTTCAGTTCCTAAGATTTTCACTACTCGTGGCTACTAGAGACCTGATATGCACCACTGCTGAATCTACAAAATCCAAAGAGTAATGATGGCGGTGATCAAATTTGGTGATGAAGCCAATTCATAGATAAAGGGGGCctgtttaaattcatttaaagaaatttaaaatggCACTTCATGAGAAAAAGGCAGCCCACCCCAGGGTAAACTAACAATCGTTCTCCATCTAGCTATTTATTGCCTTTGTTCACAACAGGAACATCTAAAACCTGAGGGGGAAAGTCTTTATAAACCTATTTGTGCATGTAGATTGGTGTTTGAAGAGCCTGGAGGTAGCTGACGCTTTTGTACTTGCATAGCATTGACGTCCGTGTGGAGGCTCATCAGAATCTCAAAAGCTGATGTTTATGCAATTTCACGCGGGATGAAATTTAATACGTACCCGCTCGATTGCGTTTGCCCTACTGTGCATTACCCTAAACCCTCCTTTACACGCCTTTAAAAAGCCGAGTGATCTTCGTTCACATAGTCCTCAACCGTCGACAGCCGAAGGTGAAATTTTAATTCGTATGCTCTTGCTGGCTTGCAAAGGGACTGAAATGGTTCTTCGACACAGGATTTCAGTTTCATTCCTCATCCTTTCAAATCTGATCGCGGTTTCAGCAGAATCATGTGACAATCGATGTCTGGCAAATTCTGTAATTGCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006248999.1 True 858 lncRNA 0.41 3 28718032 28719109

Neighbor

gene id symbol gene type direction distance location
LOC122341396 NA coding upstream 3519 28711703 ~ 28714513 (+)
cacng5b cacng5b,cacng5,LOC107698772,LOC107556612,LOC107729207,LOC107664435,LOC108437158 coding upstream 59543 28653093 ~ 28658489 (+)
LOC122341391 LOC107758342 coding upstream 398323 28316600 ~ 28319709 (+)
LOC122334736 LOC107702828 coding upstream 649933 28036420 ~ 28068099 (+)
LOC122335462 LOC107572669,LOC107732158,LOC107573385,LOC107726801,LOC107562032,LOC107743023,LOC107676321,LOC107710688 coding upstream 765575 27951751 ~ 27952457 (+)
LOC122341397 LOC107556593 coding downstream 1438 28720547 ~ 28721944 (+)
LOC122335069 amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 16890 28735999 ~ 28737619 (+)
LOC122335596 rac1,RAC1,rac1a,LOC105898786,LOC108437155,LOC108412270,LOC107569188 coding downstream 66423 28785532 ~ 28789067 (+)
LOC122335014 LOC107698764,LOC107710694,LOC107556592,LOC107729203 coding downstream 73943 28793052 ~ 28797759 (+)
amn amn,LOC107556594,LOC107710691,LOC107698770,LOC107729201 coding downstream 97469 28816578 ~ 28818102 (+)
G24139 NA non-coding upstream 1839 28709906 ~ 28716193 (+)
G24138 NA non-coding upstream 2167 28708780 ~ 28715865 (+)
G24132 NA non-coding upstream 12888 28704030 ~ 28705144 (+)
LOC122335662 NA non-coding upstream 323494 28393741 ~ 28394538 (+)
G23964 NA non-coding upstream 388621 28328465 ~ 28329411 (+)
G24146 NA non-coding downstream 38586 28757695 ~ 28831744 (+)
G24169 NA non-coding downstream 135854 28854963 ~ 28855171 (+)
G24170 NA non-coding downstream 139776 28858885 ~ 28859136 (+)
G24172 NA non-coding downstream 143164 28862273 ~ 28862502 (+)
G24174 NA non-coding downstream 145535 28864644 ~ 28864859 (+)
LOC122341395 LOC107710694,LOC107556592,LOC107698764,LOC107729203 other upstream 9424 28707031 ~ 28708608 (+)
LOC122334878 si:ch73-374l24.1,LOC107556610,LOC107698783,LOC107664393,LOC108437159 other upstream 67382 28592804 ~ 28650650 (+)
G24115 si:ch73-374l24.1,LOC107729205,LOC107556610,LOC107698783 other upstream 157708 28515643 ~ 28560324 (+)
LOC122335546 NA other upstream 1435626 27281827 ~ 27282406 (+)
G23695 NA other upstream 1870675 26846723 ~ 26847357 (+)
LOC122341400 NA other downstream 79205 28798314 ~ 28808828 (+)
LOC122335482 LOC107568598,LOC107698767,LOC107729206,LOC107664371,LOC107710703 other downstream 124705 28843814 ~ 28846375 (+)
LOC122334478 LOC107698777,LOC107556618,LOC107664385,LOC107568597,LOC797750,LOC107729209 other downstream 149970 28869079 ~ 28933084 (+)
LOC122341401 NA other downstream 329169 29048278 ~ 29054414 (+)
LOC122335397 LOC107698766,LOC107717477,LOC107552107,LOC107671248,LOC107740236,LOC107556596 other downstream 341666 29060775 ~ 29073755 (+)

Expression


Co-expression Network