XLOC_006851 (zgc:171482)


Basic Information

Item Value
gene id XLOC_006851
gene name zgc:171482
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 39656610 ~ 39830999 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013173
CATCGCCACAACAGATGCGAAACACCAACCAAAGACAAGACAAAAGTAACCGGAGTCTGTTCTCAAAATAATGGGCGCTCAGAACATTGCAATCGAGATGCTGTGAGaatgagagcgtgtgtgtgtgtgtgtgtgtgtgtgtaatccaaATCTCTGCTAGTAGTATCTGTGGATAACTGACGTGTGTGTCCGCGCTCTTACTTATATTCGTGCGCTCTCGCTTTACGCGCAGTTTGATGGCGTCGCCGCGCGCTCCTCACCGCGTCCTCCGATCATCGCTTGCGATCGCGCGGTTTATGGACGGCGAGGACCCGATATTATGATAGCACACTGTCCGGGTTGATTCTGCAACATTGTTACCAAAGTGGTCCGGGGAAGCTGTTTCTCCGCTTGAGCTCCGAACCGAGCCTAACTGAAGTTTCTCGGATACAGGTGTGATCTCTCTCTAACTCCAGCTGATGATCATTGACACGGATCTGGGCTGCCGGATTCCAGGAGATCGCAGCAGATCTAACGCAAAGATGAAGTCTGCGGCAGCTGGTGATGAAGGACTCTTCACTGAGagctactgtaacatctgcaatgcTCAGCTGATCTCTGAGTCCCAGCGCGTGGCACACTATGAGAGCAAGAAACATGCCAACAAAGTGCGCCTGTTCTACATGCTGCACCCCGAAGATGGAGGACCACCATCTAAAAGACTGAGACCAGATAATCcgGACAGTGCAGAGAATGAGGTGGACAGAAACAAATGCTGTACGCTCTGTAATATGTTCTTCACATCTGCCATTGTGGCTCAGTCGCATTACCAGGGCAAAACACATGCGAAAAGAGTTCGCCTGGTGCTCGGAGAGACACCAAGTCTGCCCACACCTACAGATTCAGCTCCGCCCACCTCTCAAACCACAGAACCACCCCCTCCCACATGGCAGCCGCTGGCCAATAACGGAGAGGCAGGGAAATACTGTTGTTTGTGTGGCGCCTGGTTCAACAACCCACTGATGGCACAGCAACACTACGAAGGCAAGAAGCACAAGAGAAACGCGGCGCGAGCAAGATTATTGGAACAACTGGCTGGCAGTCTGGACGCCAATGAAAGCACAGGCCTGCGCCGCAGTTACTCATGCAGTGTTTGTAACGTGGTCCTCAACTCTATCGAGCAGTATCACGCACATCTCCAGGGCTCCAAACACCAAAACAActtgaaGCAGAATCAGCAATGAAGAACAGCAAATCATCCAGATGACACAGACAACAGAGGCCATTTCAGCAAAACTATGAAGCTGCATAAACTAATTGTGGATACATAAGAAAATATCCTTGTTTGGTCACAAGAATTGACGTACAATATCGAAAGTTCTTCAAACATCTGCGAGCATTTTATACTTTTACTCTcaatcaaacacttaaagactGCTCTACTTTGGAATATCGTCTGTCTTTCCACGAGCATAAAAACAAAAGGATGTCTATGATCAATAAAGTCCAGTGATGTTCATCATATGGCTCGAGCGCACCAGCCTAAAGAGAcactgttacttttttttttttttttttgcctttgagACTCTTTGTATGCAGTGGCCTGTCATTTTGTCTGCTCTTCAAACCAGTCATTGCTGCTTTGGTTTGTTCGCTTTGGCATGCCGATGACAAAAAAGAGATCATCAACCTTTTTTCAGTGATTTTGTTGAGTACTTACCATAGAAGTACACAAATGCTGCCAGCGAGGAATCATTTCATCTGCCTTTTGtgtccaaaacaacattttagcaCAGACTAAAAGTGTTCATTCGCTTCGTATCATCAGCATTGCAGAATATTCTTACCAAGCTGCGATGCTGCTTAAACACTGATGTCAACTGAAATACGTCATCAATATCAAGGAGTCCAGATGCAATGAGCTGGCATTTTTTTTCACCCCGACTCCCATCACAGATGATTCACATGGACGTAAAAAGTGTGAAGCAGGCTCTGAGCTTGATCTAAATCTATGCCAAAATGACTGCCTGTAAAACCAGAGCTCAGTGCCTGCCGTTTTATGTATGAATGCTCTATTTTTGCTTTTCTGATGTGGCATAAAAATTTTAACTGTGGTGTATTTTCTTGTTATCTTAGACTATATGGTAGctacaaagcaaacaaaaacaaaaaaacaaaaaaacactgggGCCTCATTTATAAAAACGAGCACAGAGTTGCACTGAATATCAGCAAACAAGCGTTTCGTAAACATCTTATGCAATCTCATGGCAGTTTGTAACTTTTAGATTTAGAATGCTTTCACGATtgtagattgattgttttgttccgaaacagggattaaataGT
>TCONS_00013174
GGTGGACAGAAACAAATGCTGTACGCTCTGTAATATGTTCTTCACATCTGCCATTGTGGCTCAGTCGCATTACCAGGGCAAAACACATGCGAAAAGAGTTCGCCTGGTGCTCGGAGAGACACCAAGTCTGCCCACACCTACAGGCCTGCGCCGCAGTTACTCATGCAGTGTTTGTAACGTGGTCCTCAACTCTATCGAGCAGTATCACGCACATCTCCAGGGCTCCAAACACCA
>TCONS_00013175
GTGTGTCCGCGCTCTTACTTATATTCGTGCGCTCTCGCTTTACGCGCAGTTTGATGGCGTCGCCGCGCGCTCCTCACCGCGTCCTCCGATCATCGCTTGCGATCGCGCGGTTTATGGACGGCGAGGACCCGATATTATGATAGCACACTGTCCGGGTTGATTCTGCAACATTGTTACCAAAGTGGTCCGGGGAAGCTGTTTCTCCGCTTGAGCTCCGAACCGAGCCTAACTGAAGTTTCTCGGATACAGGTGTGATCTCTCTCTAACTCCAGCTGATGATCATTGACACGGATCTGGGCTGCCGGATTCCAGGAGATCGCAGCAGATCTAACGCAAAGATGAAGTCTGCGGCAGCTGGTGATGAAGGACTCTTCACTGAGagctactgtaacatctgcaatgcTCAGCTGATCTCTGAGTCCCAGCGCGTGGCACACTATGAGAGCAAGAAACATGCCAACAAAGTGCGCCTGTTCTACATGCTGCACCCCGAAGATGGAGGACCACCATCTAAAAGACTGAGACCAGATAATCcgGACAGTGCAGAGAATGAGGTGGACAGAAACAAATGCTGTACGCTCTGTAATATGTTCTTCACATCTGCCATTGTGGCTCAGTCGCATTACCAGGGCAAAACACATGCGAAAAGAGTTCGCCTGGTGCTCGGAGAGACACCAAGTCTGCCCACACCTACAGGTCCTCCATTTACAATGCAGTGGATAATAGCAAGCACTCAGAGGTGAGAGTGAGAATGTGATCATCATCGTTCACTCTCGTTCACGTTCATTCTGGACAATTTTGTGTCAAAGATAAATCTCAAATGAAAACTGCACAGCGGATAACTTTGTCAGatcatgtttttgttgttgttgttgttatttttaaagcCTTTCCATGATATTGGACTTTCTTCATGCTGTAAAAGAATGTCTGTACAatgacagttttcattttcagATTCATGTTTTTTGTGCTTATTTAGGCTTTTGAATAGCATTATGAGGCCTTGATCATTCCGTCAAAAATGTGactttgttgacatttttaatagtttgaagtgatatattgtcttggttggtgttgtaaattacagcACAAATACATGGTAATAAGCCGCTGGCacattttctcttattttacAAAACTAGCTCTCTATATGCACTACATGACAAAGGTCTtgttgtctatccaagttttaggaacaacaaataataacttggcttc

Function

symbol description
zgc:171482 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-84 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

Ensembl:

ensembl_id ENSDARG00000074415

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013173 False 2331 mRNA 0.45 7 39656610 39830999
TCONS_00013174 False 234 mRNA 0.52 2 39703036 39736938
TCONS_00013175 True 1224 mRNA 0.45 5 39729512 39830816

Neighbor

gene id symbol gene type direction distance location
XLOC_006850 NA coding downstream 152117 39499592 ~ 39504493 (-)
XLOC_006849 slc35f3b coding downstream 256643 39346298 ~ 39399967 (-)
XLOC_006848 BX324188.2 coding downstream 413938 39242555 ~ 39242672 (-)
XLOC_006847 col9a1b coding downstream 496592 39119460 ~ 39160018 (-)
XLOC_006845 BX323574.2 coding downstream 785809 38798045 ~ 38870801 (-)
XLOC_006852 sfrp5 coding upstream 80552 39911551 ~ 39947335 (-)
XLOC_006853 crtac1b coding upstream 233482 40064481 ~ 40141630 (-)
XLOC_006854 loxl4 coding upstream 351488 40182487 ~ 40238813 (-)
XLOC_006855 zgc:123010 coding upstream 416380 40247379 ~ 40282770 (-)
XLOC_006856 pyroxd2 coding upstream 453873 40284872 ~ 40316367 (-)
XLOC_006471 BX537274.2 misc downstream 29391705 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 38830385 825904 ~ 826225 (-)
XLOC_006846 BX323574.1 non-coding downstream 803358 38853137 ~ 38853252 (-)
XLOC_006843 NA non-coding downstream 1036891 38613225 ~ 38619719 (-)
XLOC_006842 NA non-coding downstream 1461396 38190521 ~ 38195214 (-)
XLOC_006859 NA non-coding upstream 587317 40418316 ~ 40419308 (-)
XLOC_006863 NA non-coding upstream 1130736 40961735 ~ 40977410 (-)
XLOC_006864 NA non-coding upstream 1180833 41011832 ~ 41114062 (-)
XLOC_006866 BX548002.1 non-coding upstream 1399294 41230293 ~ 41230409 (-)
XLOC_006867 CABZ01117863.1 non-coding upstream 1831973 41662972 ~ 41663088 (-)

Expression


Co-expression Network