Item | Value |
---|---|
gene id | G18876 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000001 |
NCBI id | null |
chromosome length | 13537560 |
location | 10390688 ~ 10391598 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU21194 | True | 384 | lncRNA | 0.46 | 2 | 10390688 | 10391598 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000001_10328133_10329110 | NA | coding | upstream | 61578 | 10328040 ~ 10329110 (+) |
CI01000001_10321783_10325266 | NA | coding | upstream | 65383 | 10321647 ~ 10325305 (+) |
CI01000001_10150798_10152858 | MIPA | coding | upstream | 237750 | 10150373 ~ 10152938 (+) |
CI01000001_10141190_10146911 | PTGES3, PTGES3A | coding | upstream | 242630 | 10141190 ~ 10148058 (+) |
CI01000001_10093069_10104108 | RND1B, RND1, RND1A | coding | upstream | 284989 | 10092902 ~ 10105699 (+) |
CI01000001_10395420_10396473 | NA | coding | downstream | 3253 | 10394851 ~ 10396705 (+) |
CI01000001_10420931_10426716 | NA | coding | downstream | 28720 | 10420318 ~ 10427147 (+) |
CI01000001_10525795_10530510 | WNT1 | coding | downstream | 131664 | 10523262 ~ 10530543 (+) |
CI01000001_10538498_10539667 | RPS26 | coding | downstream | 146790 | 10538388 ~ 10539846 (+) |
CI01000001_10573770_10582123 | LMBR1L | coding | downstream | 182172 | 10573770 ~ 10582238 (+) |
G18878 | NA | non-coding | upstream | 46567 | 10340037 ~ 10344121 (+) |
G18880 | NA | non-coding | upstream | 52539 | 10336887 ~ 10338149 (+) |
G18874 | NA | non-coding | upstream | 54772 | 10284763 ~ 10335916 (+) |
G18884 | NA | non-coding | upstream | 70613 | 10304931 ~ 10320075 (+) |
G18902 | NA | non-coding | upstream | 138034 | 10252108 ~ 10252654 (+) |
G18882 | NA | non-coding | downstream | 10632 | 10402230 ~ 10403910 (+) |
G18951 | NA | non-coding | downstream | 40359 | 10431957 ~ 10433760 (+) |
G18967 | NA | non-coding | downstream | 42621 | 10434219 ~ 10434542 (+) |
G18968 | NA | non-coding | downstream | 44172 | 10435770 ~ 10435995 (+) |
G18969 | NA | non-coding | downstream | 45055 | 10436653 ~ 10436873 (+) |
G18872 | NA | other | upstream | 109319 | 10271146 ~ 10281369 (+) |
G18873 | NA | other | upstream | 129974 | 10223879 ~ 10260714 (+) |
G18896 | NA | other | upstream | 149196 | 10239900 ~ 10241492 (+) |
CI01000001_09435836_09436037 | NA | other | upstream | 952625 | 9435836 ~ 9436373 (+) |
G17354 | NA | other | upstream | 1150011 | 9234463 ~ 9240677 (+) |
G18937 | NA | other | downstream | 83386 | 10474984 ~ 10476389 (+) |
G19039 | NA | other | downstream | 459326 | 10850924 ~ 10853983 (+) |
G19314 | NA | other | downstream | 1109596 | 11501194 ~ 11558673 (+) |