LOC122337868


Basic Information

Item Value
gene id LOC122337868
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21248110 ~ 21251430 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006249626.1
GTAAGGCCAAATTTTGGGGGAGGGAGCAGGGTGCTGGGAGTGGGATGGGGGGACAGATTCACCAAGCTgggaacaaataaaacatagcAGCATATATCACCAACAGCTGAggaaacatcatcatcatcagagcATACCTTCTGTGGAGATAAgtcatgaatatttttttgccattcaaaacaaaaactttaccTGGACCaagtctcttttttgtttaccTAAGATTTCTCTGGAATACATCCTGGATACAGAGTTCTTGAATCATCGGAGTCCACACCTTTACATTACTAGCTTCAGCTGTCTGGAAAACTTTCTCAAGGAGATGAACAAAAACTGGCCATTCCATTACATTGGAAAGTCAAGATATGGGGACATCAACAAGAGCCTTTCTTTGACCGCTGGAACTCTTACCTCTCAACTTCGACCTGGGAGGCAGTCATCATGCCCTATTTTACACTGCATCATGTCGTGCCCTGATCTATGTGATCACCTTGCCCTTTATCAGTGATGATGTTACTGTTATTCACTGCTACAGATCTCATGGTTCAAAGCACTGAACTCTTGTTACATAGAAACAATGTTTGGAATACTCTTGTATCCAAAACAACTTTCAGTGCATTTGAGGTATCCCATTAGTAAAAACCCACCGACAAACgcgtaaacatatttttgagtgCCCTTACACTGAAACCTCTATTTGCCCCCCTCTGAAACTGACATTTGTTTAGTCTTTTTTGTTTGGAGTGTAAAAACTGAACAAGTAGAAAACTGAAACTGTGTAAACTTTGTGACTGTCTATAGCACGTCAGTGATCCAGAATGTATGTGTAACCATTGAAAAAAGCAGCAGAAATGCAACATCACTAACATTTCGATCTTAGCGCAGAACAAACTCAGCTTTGAGATAAGTGGGTAGGTTATGGGGAGTGAAAATAACCATGTTTCTGTTGGTCAAGACCCTTCTCCACAATGTCAACAGCTCTCAGTTTCAACAAAgatgctttcaaaaatatattgattagATTTGCTCCTGAATTTCGAGTTCAGATCATCTAAAATTCAAAGATGTTCCTGACCATTTCAACCTGGTTTAAAGGTCGCTGAAGACAGAACAAAAACTTTCACTGTGGACTGAGAGACATGACGATAGGAGTGAGGGTTTGATGATTGAGAGTGAAGGAAATAAGAGTATGGTCTCCTGATCTCAATGTACCAGACAAATACAGACACATGAGAGAAGCACGGGAGGTTTTAGCTATGTGTCTCTCAGAGCACCAAGTAATCTGAGCTAATCACGATCCAATTAAGCAGTGTTTGAGATTTCTTTGCTAGCAGCTATTAATTAAGATTCaaaaatctcatttttttttcttgtcaagTCCGTCGTGCTATGTAACTTgtcttttaatgtttcaaacaGCTCTGGCATGGCCATACAGGAGATGTGGGAAGTGGAGAAAGGCCTATGCCCTTTTCAACAAAAGCGTCTTTGTGTTTATAATAATCTGTGAGGTCTGAAGTCCATTTTTGTAATTCTTTCTCGTTCTTTTTTCCACACTGCATTAGCATAGCATGTGTTTCATGTGTTTAACAATTCCTACATTATGCCATCCAGATGGTAGAACCTTGGAAAGTTTGGTTCTAACCACGGTGCtgtatacttaataaatatgtgCTGACATTAA

Function

GO:

id name namespace
GO:0046658 anchored component of plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006249626.1 True 1684 lncRNA 0.40 2 21248110 21251430

Neighbor

gene id symbol gene type direction distance location
zwi zwi coding upstream 1302 21244992 ~ 21246808 (+)
LOC122337590 nxph3,LOC107710880,LOC107568907,LOC107660556,LOC107754835,LOC107590800 coding upstream 189861 21030624 ~ 21058249 (+)
tmub2 LOC107571926,LOC107708558,LOC107754824,LOC107566939,LOC107660620,LOC107689088 coding upstream 459106 20784533 ~ 20789004 (+)
asb16 LOC107708556,LOC107660653,LOC107689112,LOC107566969,LOC107571928 coding upstream 463722 20780215 ~ 20784388 (+)
vat1 vat1,LOC107567018,LOC107754778 coding upstream 480511 20743788 ~ 20767599 (+)
LOC122341346 LOC107582910,LOC107684633,LOC107725046,LOC107694962,LOC107590781,LOC107727455 coding downstream 64843 21316273 ~ 21329556 (+)
LOC122337639 syngr1a,LOC107725053,LOC107684634,LOC107727456,LOC107590782,LOC107582870,LOC107694963 coding downstream 78898 21330328 ~ 21343248 (+)
LOC122341347 NA coding downstream 102937 21354367 ~ 21363114 (+)
LOC122337169 LOC107731852,LOC107571197 coding downstream 112009 21363439 ~ 21366154 (+)
LOC122337825 LOC107590788,LOC107684637,LOC107710882,LOC107678872 coding downstream 137717 21389147 ~ 21403118 (+)
G22044 NA non-coding upstream 34494 21141065 ~ 21213616 (+)
G22035 NA non-coding upstream 146509 21101207 ~ 21101601 (+)
G22034 NA non-coding upstream 148387 21099498 ~ 21099723 (+)
G22033 NA non-coding upstream 153279 21093666 ~ 21094831 (+)
G21761 NA non-coding upstream 290784 20956662 ~ 20957326 (+)
LOC122337912 fam57b,LOC107684641,LOC107678875,LOC107754912,LOC107710888 non-coding downstream 2316 21253746 ~ 21269492 (+)
LOC122337857 NA non-coding downstream 38919 21290349 ~ 21291935 (+)
G22094 tcap,LOC107684635,LOC107590785,LOC107582871,LOC107727457,LOC107694957 non-coding downstream 93699 21345129 ~ 21493498 (+)
G22084 LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878 non-coding downstream 130378 21381808 ~ 21383124 (+)
G22197 NA non-coding downstream 384314 21635744 ~ 21636079 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other upstream 291536 20882198 ~ 20956574 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other upstream 1052389 20185535 ~ 20195721 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other upstream 1134612 20094851 ~ 20113498 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other upstream 1178857 20064270 ~ 20069253 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other upstream 1844934 19399408 ~ 19403176 (+)
G22087 taok2a,LOC107755091,LOC107590788,LOC107684637 other downstream 44272 21295702 ~ 21414286 (+)
crhr1 crhr1,LOC107662410,LOC108261365,LOC108413653,LOC107754311 other downstream 386313 21637743 ~ 21734127 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other downstream 723822 21975252 ~ 21976665 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other downstream 725079 21976509 ~ 22025911 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other downstream 1017556 22268986 ~ 22336227 (+)

Expression


Co-expression Network