LOC122341104


Basic Information

Item Value
gene id LOC122341104
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 3987526 ~ 3991553 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250423.1
GTCACAGGTAAGCCGCAATTATTAAGAGATTAAAATGTCTCAAATGTCTCTTTAGTGTaagaacaatttgttattttaatctttGTCATACAGccctaataaatatttagttttgcagcaaataattaaaaatacaaataaatgttacctttaaaacacaaataaaaggaATTTAACTATTTATGAAGCCATTCCTAATTGAATTGATCCACTGAACCAAATTCATAGATTTGAtgtaaaacttaaattaaaaatacattatttactgaaaataaatgatccaCTGAGAGCATTGGTTATGAATTTCATAGTTCATAAGTGATAACTTTACAGTCTTGTGTCAGGCAAGAACAGCaattttaaagtgcactttGGATTTTGACACTGACCTGAATTTCTGCTATAATACAGTtcaaaaaatgacagaatatgGAACTGTTTATATGTGCTGAACTGAGTTGAACTCTTTCAATGGAACAACTTGTTTTCTTTAGTAAAGAGGAGAAAACATACTATGGAGATCAATGGTGAACCAAAACAGcttggttacaaactttctttaaaatatcttttcgACTAAACAGGTTTAGAACTACttgaaaatgacagaattttcattttcttttaagtttGCTTATACAAATAAACTACAGAGTAacatgcactcttaaaaataaaggcactTAAAAAGTTCTTCACAGTGACgtcatagaagaaccatttttggttccacagaAAACCAATAAgtgaaaggttctttaaagaaccgtttttttacctttttataatctgaaaaaCCTTCTTTCGccacaaagaaccatttgtGAAACGCAAAGGTTCTTCATTTAaccatttacataaaaaaggtTATTCTATGGCATTGTGTGCATTGagtgtacagtaaaaattaacaCACGACTATATAACATATGACAAGAGTGTACAGTAATTACTAACACATGACCACGTAATGCATAACGAAGATATaaccaaaaacaattacaaaccATTAATTCCTCCTTTGGATTATGCagtaaactttttaaataattatgagaCACCAGGTTTTGTAAATTCATCAAAAGGTTATTGCAACTTTTAAATAAGATTCTAATCTAAAGTcttttgaatttaataaaaaactgaaaaaataaatcttaaacaaTAAATCTGGCTCTAGTAATAATATGTCGCCATCTACAGTATCACAGGTCATTGATcaatatcaataaaaacacaagcacctactaaaatgatttaagtACAAAAAGACAGGTATAAAACTGCAGTTAAAAGATCTTTCATCATGCATGTTATACAGTGAAATCTAAGGggatgtaataataataaattcaaacagcttttaaaggCACTTTTggtaaaagtgatttaaaaaaagccaatgACATCTACTTTCCAAAGGTCTGATTTGGGTTATTTATTGAGTTGATGATAAATTGTGTTTGTCCAGTAATAGATCACCAGTCCAAAGGTAAATCATCTGGGTCTCTTCTTTTAAATCCAAATCCACTGCATTTCTGACACCTGAAAGGTAAAGAGTTCAGATCTCATCACCGCCGGATCCACAGACTCTTTCTGGAGCTTTGACCAGCTCCGTAACCATTTGTGAGACCATTATGGCTGCTATAAACAGCTCAATTAAGGCATAAAAGAGCACACGTCTAACACAACATACATCAAATCTTACATAAGAAACCTTGATGTGTCCctgcacagaaaaacaaaagtgtatCTGGATTACAATCAGCcatcaaaatgatttgttgacatttaattattctagCTATAATTAGTTAAACTAGTTAATTAAAGTAGGCTATAATTAAACGATGCGCCTCCAGCGAAAACCTCCACCAAATGAGGCCGTAGGACagcttctttatgtttacagacgtGACGTAATGATGCAGTGCCATGCCGGGATTTCCCACGAAAACCCACCCGTAccactcaaaataaaaaatatcattgtAAGCTAATCGTTGTGAATTGAGGTAAAGTAAGGCAATggttttgaacactggctggttatgtacttgctcaaatattgattttggataattgttaaccaaaaaaatgttacagactgcagctttaaagaTCAAAAGGATCTTTGCACATACACTCATATACACATTTTTCTCATTGTCATACCAACTTTACATTGACAATatcaaaccatttttaaaaacgtaaaaagaTTTATTGCTGACATTTTATTGCTGTGGTTTaaacgttatttaaaataatgtgtgacGTTGTCCATTTGTCAGGGTGTGGTTTGCGAGAGAAGGAGCGCTAGACGAGAATGCTACAAACATAAAGCttccaaacacaaaagaaacaatatCCTTACAAATAGGCAGGCAGAAAATAACCACACATATAAACGACGaccggacaaactgaactgaaacacacagggaataaatacacaaagtaattgactaaattaacaagacacacctgagcATAATGAGACAATTAGGAGCAACGaaaaagtagggcacacagagcacatgggacaaatcaaaacaacaacaaaagagtccaaagacgtgacaccATTAAACAATAGTAAGGAAGTGAACCCAGAAATATATGTGTGACATGAACAAGTTACATCAAATGTATTTGCATTGCTTATATGTTGCTCAAATTATTGTGCATATCATCTTTCATTAGAAAATGATGACAACGGCAGCAGCATTATGGATGGAAGATCCAATTCAAGCGGTGATGTGTCTGCAGTAGACACCAAATAATGAAGCGACTTTAAGTCATGCAGTTGATGTGAGAAACGGTTCTTCAGCTGCCATCCGTCCTGGTTTCCCTGTCTCAGGCAGAAGACCACCGGCTGGCACTTTGAGTGATCTGAGGGTAATCGTGAGAGCGTCTCCACCAGGTCCATGCCCGCAGACCTCCCTAGGTGGAGAGGGCGGTTGTGGTGCACTTGTGCCCACAAAACACATCCGGGGGCAATCGTCCACGTCTCCCTTCCCGGCCCTGTAGGACCACGGTAGCTCTCAGTGCTAAGGCTTACACTGCAGCTGGTCAGGCTGCTTTTGCCTTGCATGCCACGGCTATCCTGCAGGACCAGCAAGTCAAGGCACTGAAACAGCTGCATGAGGGTGAGTCTGACCCGCGGTTGATGCAGGAACTGCGCACGGCGACCGACTTTGCCCTCTGGGCAATGAAGATCATGGCAAGGTGCCTTGGGAAGGCGATGTTCACTTTAGCAACCCAGGAGCGCACTTATGGCTCAATCTGGTGGAAATGAAGGACGTCGAGAAGGTCCGCTTTCTTGAAACCCCGATCTCTCAGGCTGGGCTATTCGGCGACACTGTCGAGGACTTCAACGGCAGGCCAAGGCGATCCAGCACATCTTTTAGGCGTGTCTCTTTAGCTGCCAGTGTTGAGTCCAGTCGCCCCGTGCTGAGACCTAGTCGAGGTCGGCACATCGAGCCTCCCGCAGTAAGGTTCACAGCTGACCTCTAAGTCCTCTAGGAAGATGACGAAGAAGCCCAGGGATGGGCGGCCCGGAGAGGCAATAGACTGCTTTTCAGGAGGTGGGGAGCTCAGTAGCACTCTTTCCCTCGGAGGAGGGCCGTGTGGAGAATCCTTGGATTACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250423.1 True 3655 lncRNA 0.39 2 3987526 3991553

Neighbor

gene id symbol gene type direction distance location
LOC122333504 LOC107695702,LOC107724673,LOC107601588,LOC107673211,LOC107553654,LOC107716264 coding upstream 36871 3947832 ~ 3950655 (+)
LOC122340641 LOC107724675,LOC107673198,LOC107601590,LOC107695672,LOC107716262,LOC107553642 coding upstream 49104 3928348 ~ 3938422 (+)
LOC122341043 LOC107716255,LOC107673187,LOC107695671,LOC107724671 coding upstream 71090 3912009 ~ 3916436 (+)
sstr5 sstr5,LOC107601569,LOC107695669,LOC107673199,LOC107716263 coding upstream 86077 3895268 ~ 3901449 (+)
mrps7 mrps7,LOC107695700,LOC107673207,LOC107724659,LOC107579769,LOC108262546 coding upstream 109659 3875326 ~ 3877867 (+)
cfap70 cfap70,LOC107735674 coding downstream 130206 4121759 ~ 4134915 (+)
hmox2b LOC107601585,LOC107742125,LOC107695708,LOC107553648,LOC107718627,LOC107678258 coding downstream 144317 4135870 ~ 4145083 (+)
coro7 coro7,LOC107601580,LOC107715621,LOC107553663,LOC107695655,LOC108276516,LOC108431934 coding downstream 163517 4155070 ~ 4274967 (+)
pam16 pam16,LOC106601835,LOC107695711 coding downstream 283645 4275198 ~ 4276673 (+)
tfap4 tfap4,LOC105021644,LOC107553667,LOC107695712,LOC107601578,LOC107715644,LOC107718566,LOC107661646 coding downstream 326106 4317659 ~ 4328198 (+)
G16664 NA non-coding upstream 42487 3944601 ~ 3945039 (+)
G16651 NA non-coding upstream 104821 3881900 ~ 3882705 (+)
G16639 LOC107570712,LOC107573119,LOC107663479,LOC107553614,LOC107750165,LOC107673185,LOC107716258 non-coding upstream 126241 3838870 ~ 3861285 (+)
G16619 NA non-coding upstream 166099 3800652 ~ 3821427 (+)
G16623 NA non-coding upstream 183015 3745907 ~ 3804511 (+)
G16675 NA non-coding downstream 26980 4018533 ~ 4023201 (+)
G16685 NA non-coding downstream 27694 4019247 ~ 4019689 (+)
G16686 NA non-coding downstream 32645 4024198 ~ 4035062 (+)
G16693 abca3b,abca3,LOC107678264,LOC107718613,LOC107553624,LOC107742093,LOC107601545 non-coding downstream 51319 4042872 ~ 4043399 (+)
G16883 LOC106606498,LOC106592966 non-coding downstream 158029 4149582 ~ 4150963 (+)
G16667 NA other upstream 1915 3947623 ~ 3985611 (+)
LOC122332297 NA other upstream 174182 3809170 ~ 3813344 (+)
mmd mmd,LOC107695694,LOC107710982,LOC107601597,LOC107567562,LOC107696363,LOC107718937 other upstream 460612 3510076 ~ 3526914 (+)
G16541 LOC107553655,LOC107673212,LOC107601591,LOC107716265 other upstream 664472 3320820 ~ 3323054 (+)
G16530 LOC107601546 other upstream 703870 3282990 ~ 3283656 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other downstream 365479 4357032 ~ 4405384 (+)
G16955 crebbp,LOC108440697 other downstream 445735 4437288 ~ 4438201 (+)
G16979 NA other downstream 467145 4458698 ~ 4462274 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other downstream 479179 4470732 ~ 4546567 (+)
G16981 NA other downstream 914103 4905656 ~ 4906966 (+)

Expression


Co-expression Network