LOC122341519


Basic Information

Item Value
gene id LOC122341519
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13172039 ~ 13173224 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250467.1
gaatataaaaaaatatagctatattttcaaaatatatacttgtgtatctttacatatacataataaatacagtacatgcacgtattgtaaacaaaaacgttcatggatgcgattaatcgtttgacggcACTAATTTATACGTATTCATATATAGTGTGCTTTTAAATCATAGAGGTTTCATAGTAAGAAAAGACATCTGACCAGTAGCACCGAGTGTGATTTTGTTGAAAAAGTTTGCCATGTTTATTTGCACTAATGGTGTATTTGATGGATTTCTGTCCACAGTTTGGCTTTGAGATCAATCGATAGAACTACTTCAGGGGTTCATTTAGCATCCAGCTGACCATATGAGTCAGGTGGTTGCTTTTATAAAGTACTTTTGAGGAGTTTGTGGTTGTTTCTTTTACGTGCCCAGTGGCTACTATTCATTCACTGTAATCCAGGACTCCCTTTACAGGTTAGACTGAGCAAGTATAATTAGAGAGATATGCAGGAGTCTTTGCTTTCCCGTTCACTGTCGACTAGTACTTTGCCTGGTCACCTGATACTCGTCCTCGGAAAAAAATCAGATGCTCATCCAGAGCGTCAAACCACAGCTCCGATTTATGAAGACGTGTCAAGTGTGAAAGGAGAAGGAAGCGGAGCAAACCGTCACTGCATGCGTCCATCAGACCCAGAAGCATCTGCTATGCTGGAGAACCTCTGGATCCCCCAAATGACCAAATGTGGAACAGCATCAGGAAAATCAGCTTAgtgcataattaaaatagatCAATTTCCAGGGACATGAACAAAATCTATAATGTATGCAAATGTATAATGAACAGCATTCAAAACATATTACAATTCCTAGTTCTTCACCATATTTAAATGACCTTTTGGCCCgtcttcctttttgttttaattgtaagtAGCAATAAATATAGTCAACCCGCTC

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250467.1 True 937 lncRNA 0.38 2 13172039 13173224

Neighbor

gene id symbol gene type direction distance location
znf207a znf207a,LOC107590415,LOC107698690,LOC107601239,LOC107689623 coding upstream 1785 13163996 ~ 13170254 (+)
slc25a23b slc25a23b,LOC107601238,LOC107698653,LOC107724434,LOC107689624,LOC107753149,LOC105898533,LOC108444036 coding upstream 9732 13154507 ~ 13162307 (+)
timm29 zgc:110046,LOC107736790,LOC107601237,LOC107698646,LOC107753167,LOC107689699,LOC107578239 coding upstream 35289 13134670 ~ 13136750 (+)
carm1 carm1,LOC107698604,LOC107689626,LOC107753277,LOC107724424 coding upstream 42431 13116031 ~ 13129608 (+)
aldh3b1 aldh3b1,LOC107698763,LOC107601228,LOC108444046,LOC108258475 coding upstream 64192 13103276 ~ 13107847 (+)
dlx4a dlx4a,LOC107709990,LOC107689696,LOC107590410,LOC107753083,LOC107688148 coding downstream 213204 13386428 ~ 13391506 (+)
dusp3b dusp3b,LOC107753093,LOC107688089,LOC107590411,LOC107709997 coding downstream 218749 13391973 ~ 13394963 (+)
cdk5r1a cdk5r1a,LOC107709992,LOC107689695,LOC107601231,LOC107688088,LOC107753032,LOC108442536 coding downstream 288828 13462052 ~ 13468151 (+)
itga3a LOC107601250,LOC107689616,LOC107688090,LOC107709989 coding downstream 300284 13473508 ~ 13501419 (+)
ca10b ca10b,LOC107753024,LOC107601251,LOC107710000,LOC107689615,LOC107590442,LOC105907875,LOC108442538 coding downstream 328380 13501604 ~ 13520389 (+)
LOC122330830 NA non-coding upstream 19720 13140282 ~ 13152319 (+)
G19629 ighv4-5 non-coding upstream 75185 13005810 ~ 13096854 (+)
G19626 NA non-coding upstream 79399 13088254 ~ 13092640 (+)
G19628 LOC107710248 non-coding upstream 89885 13077933 ~ 13082154 (+)
G19624 NA non-coding upstream 95345 13072133 ~ 13076694 (+)
G19722 NA non-coding downstream 53335 13226559 ~ 13227185 (+)
G19757 NA non-coding downstream 171271 13344495 ~ 13351575 (+)
G19756 NA non-coding downstream 182992 13356216 ~ 13357051 (+)
G19775 NA non-coding downstream 184489 13357713 ~ 13358408 (+)
G19776 NA non-coding downstream 185277 13358501 ~ 13359045 (+)
si:dkey-204f11.64 LOC105898698 other upstream 57183 13112477 ~ 13114856 (+)
LOC122332158 LOC107583070,LOC107737766 other upstream 184126 12835381 ~ 12987913 (+)
gtpbp1 gtpbp1,LOC107554141,LOC107737742,LOC107582974 other upstream 643236 12519837 ~ 12528803 (+)
G19326 NA other upstream 658318 12511926 ~ 12513721 (+)
nbr1b LOC107658519,LOC107729513,LOC107689639,LOC107737750,LOC107554134,LOC555713 other upstream 856993 12303364 ~ 12315046 (+)
rbbp6 rbbp6,LOC107689611,LOC107710004,LOC107590402,LOC107601255,LOC107688097,LOC107720072 other downstream 525313 13698537 ~ 13710865 (+)
slc16a3a si:ch211-234h8.7,slc16a3,LOC107720094,LOC107688105,LOC107590394 other downstream 822737 13995961 ~ 14002378 (+)
G19973 NA other downstream 876266 14049490 ~ 14053032 (+)
G20015 cog1,LOC107721521,LOC107601277,LOC107654497,LOC107590385,LOC107688115,LOC107719994 other downstream 945243 14118467 ~ 14119570 (+)
smim22 si:ch1073-443f11.2,smim22,LOC107688153,LOC107721520,LOC107601279 other downstream 946961 14120185 ~ 14123128 (+)

Expression


Co-expression Network