LOC122341922 (LOC107695122,LOC107583308)


Basic Information

Item Value
gene id LOC122341922
gene name LOC107695122,LOC107583308
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23396501 ~ 23400922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250502.1
CTGCTGTATCTTCTGTTGTAGAGGAGCCTGATCAGACCACAGATGAAGAAGCAGCTCCTCAGATGAACTTCAGTGGTTCTCCTGCTGAATGGCAGAAACCTGTCACTTCTGAAGGGACTGAGAAGACAGACCAGACGCAGCTGTTTGATTTTCTGGCAAACCAGTTTAATACCATCAACAACACCCTGAAATCAATTGATTTGTCTTTGAAGAAGCTGGTGGAGAAGGAATCACAAAACACACTGCCTCAATACATCAGTCTAACTCCTGCTGTCATTGAAAACCTCCAGATTCAGTCCTCAGTCAAGGAGGAGCAAATCACACAAGTTTTAAATCAATGAAGTAGACTTTGACACTGAACAGAGTTAGTACTGAGGAAGCAGGACTGTGATCTGAGAGGTTATGGTTTTAAAGACAGCTTCAAAAACTTGTGGTCTAATTTGAACTTGAACTAGTGGtctaatggtttttaaaaatacatgtaaggTATATCCATAGATATGTGATCCCCCATTTCTTATAAAAGGCCAATTCagaaatggattttaaaaagcaatccCATATTAAATTCTGAATGTTATGCACCTGT

Function

NR:

description
PREDICTED: nuclear autoantigen Sp-100-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250502.1 True 589 lncRNA 0.40 2 23396501 23400922

Neighbor

gene id symbol gene type direction distance location
LOC122341358 LOC107585025,LOC107716530,LOC107662363 coding upstream 4314 23372660 ~ 23392187 (+)
LOC122341901 LOC107740603,LOC107662366,LOC107690737,LOC107602322,LOC107585068 coding upstream 60016 23326597 ~ 23336485 (+)
LOC122341903 LOC107740604,LOC107662367,LOC107585029,LOC107710048,LOC107602318,LOC107690738 coding upstream 76669 23310836 ~ 23319832 (+)
pvalb6 LOC107585030,LOC107662370,LOC107690741,LOC107602319,LOC107710050,LOC108258409,LOC108412390 coding upstream 95744 23262991 ~ 23300757 (+)
pdgfbb LOC107710051,LOC107582898,LOC107740670,LOC107656789,LOC107585031,LOC107662372 coding upstream 164201 23221703 ~ 23232300 (+)
si:dkey-68o6.8 NA coding downstream 9697 23410619 ~ 23412806 (+)
sp100.4 LOC107748809,LOC107583267 coding downstream 14505 23415427 ~ 23420974 (+)
slc25a17 slc25a17,LOC107748783,LOC107672147,LOC107709637,LOC107695117,LOC107602302 coding downstream 37476 23438398 ~ 23444074 (+)
mrtfaa LOC107695127,LOC107723606,LOC107602328 coding downstream 44064 23444986 ~ 23480291 (+)
cbx7a LOC107695130,LOC107748788,LOC107583303,LOC107602332,LOC107672137,LOC107723608 coding downstream 181509 23582431 ~ 23587628 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding upstream 247883 23100944 ~ 23148618 (+)
G22584 NA non-coding upstream 279661 23114278 ~ 23116840 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding upstream 301079 23089473 ~ 23095422 (+)
G22554 ddx5,LOC107695114 non-coding upstream 367996 22940247 ~ 23028505 (+)
G22340 atp5g1,LOC107740625,LOC107662391,LOC107582887,LOC107585044 non-coding upstream 723590 22511428 ~ 22672911 (+)
LOC122341920 LOC107672134,LOC107602299 non-coding downstream 11891 23412813 ~ 23414909 (+)
G22754 NA non-coding downstream 162118 23563040 ~ 23563246 (+)
G22757 NA non-coding downstream 173976 23574898 ~ 23578241 (+)
G22758 NA non-coding downstream 177554 23578476 ~ 23646166 (+)
G22800 NA non-coding downstream 266983 23667905 ~ 23672990 (+)
LOC122341898 LOC107662363 other upstream 34559 23343964 ~ 23361942 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other upstream 52861 23338379 ~ 23343640 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other upstream 232785 23158219 ~ 23163716 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other upstream 488366 22899333 ~ 22908135 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other upstream 625899 22765647 ~ 22770602 (+)
LOC122341907 NA other downstream 2519 23403441 ~ 23408814 (+)
zmp:0000000912 LOC107748810,LOC107695116,LOC107583322,LOC107695109,LOC107583307,LOC107709636,LOC107672113,LOC107602301 other downstream 23699 23424621 ~ 23431766 (+)
c1qtnf6a c1qtnf6,c1qtnf6a,mgat3a,LOC107695119,LOC107723613,LOC107672153,LOC107583300,LOC107748818,LOC107580620,LOC107695120 other downstream 308581 23709503 ~ 23721719 (+)
LOC122342055 pik3r6,LOC107719336,LOC107703883,LOC107563351,LOC107728708,LOC107583295 other downstream 638980 24039902 ~ 24051913 (+)
G22958 NA other downstream 694102 24095024 ~ 24097159 (+)

Expression


Co-expression Network