LOC122341984


Basic Information

Item Value
gene id LOC122341984
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 4912694 ~ 4914493 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250507.1
agAGAGTGATCAGCTACAGATGGACATCAGTACAATACAACAAGAGCATGATCAACTGCAGACGGAGATAAGCAGAATACAACAAGAACATGCTCGACTACAGGAGGAGAAGAACAAAATACAACAAGAACATGATCAGTATGTAAAGAAGATGAAAGAAGGATCCTTTTTGTCTCGCTTGTTTTCAAAGGgaaaataataggatgaaaaaaagagtgtttttcACAGTGAGATGCAGGTGAAGGAGAGCACATGGAGCCTTAGAGGCTGGTTTTAGATTAAGAGGACCTCTTTTTATGTGAAGTTCATGTCTCATATCTACAATTACATTCATCAGTCTTTTCAAAAGTCTCTGTTATCAATTcgacgatagtcactagaagttaagtgtctcCAACAAAGCAaaccagaggcgacagcggcaaggaaacaaaaccccatccatacagaatggagaaaaaatggagaa

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250507.1 True 469 lncRNA 0.39 5 4912694 4914493

Neighbor

gene id symbol gene type direction distance location
LOC122341832 NA coding upstream 18087 4892115 ~ 4894607 (+)
LOC122341768 coa1,LOC107600219,LOC108428892 coding upstream 82213 4827437 ~ 4830481 (+)
wdr48b wdr48b,LOC107757819,LOC107662983,LOC107600221,LOC107713656 coding upstream 92038 4812939 ~ 4820656 (+)
LOC122332276 urgcp,LOC107662982 coding upstream 100225 4800795 ~ 4812469 (+)
LOC122334471 NA coding upstream 113544 4795442 ~ 4799150 (+)
si:dkey-282h22.5 NA coding downstream 38008 4952501 ~ 4957859 (+)
antkmt fam173a,LOC107553674 coding downstream 43519 4958012 ~ 4961980 (+)
xpo6 xpo6,LOC107715628,LOC107718574 coding downstream 49068 4963561 ~ 4983738 (+)
nme4 nme4,LOC107715653,LOC107695718,LOC107718576,LOC107661657,LOC107553633 coding downstream 72947 4987440 ~ 4991394 (+)
gadd45gip1 LOC107553677,LOC107661658,LOC107735399,LOC107715629,LOC107550245 coding downstream 325080 5239573 ~ 5241326 (+)
LOC122333539 NA non-coding upstream 9415 4898839 ~ 4903279 (+)
G17018 LOC107715650,LOC107550229 non-coding upstream 45376 4865208 ~ 4867318 (+)
G17003 NA non-coding upstream 118660 4792546 ~ 4794034 (+)
G16991 NA non-coding upstream 258440 4604054 ~ 4654254 (+)
G16990 NA non-coding upstream 262056 4602024 ~ 4650638 (+)
G17026 NA non-coding downstream 77503 4991996 ~ 5035379 (+)
LOC122341773 NA non-coding downstream 292751 5207244 ~ 5211693 (+)
G17059 NA non-coding downstream 294163 5208656 ~ 5208867 (+)
G17061 NA non-coding downstream 305157 5219650 ~ 5220372 (+)
G17056 NA non-coding downstream 340007 5254500 ~ 5257752 (+)
G16981 NA other upstream 5728 4905656 ~ 4906966 (+)
G16978 LOC107601574,LOC107654242,LOC107715645 other upstream 366127 4470732 ~ 4546567 (+)
G16979 NA other upstream 450420 4458698 ~ 4462274 (+)
G16955 crebbp,LOC108440697 other upstream 474493 4437288 ~ 4438201 (+)
LOC122340527 adcy9,LOC107715643,LOC107661757,LOC107695715,LOC107576850,LOC107718568 other upstream 507310 4357032 ~ 4405384 (+)
elof1 elof1,LOC103393660,LOC100703874,LOC106589640,LOC106935058,LOC103384163 other downstream 396000 5310493 ~ 5312371 (+)
nfil3-2 nfil3-2,LOC107659565,LOC107550255,LOC107711126,LOC107718587,LOC107563256,LOC107656794 other downstream 501265 5415758 ~ 5480607 (+)
LOC122331163 LOC107653472,LOC107718593,LOC107563253 other downstream 642515 5557008 ~ 5565974 (+)
G17302 NA other downstream 682606 5597099 ~ 5598232 (+)
LOC122341474 dhps,LOC107661880,LOC107563249,LOC107653447,LOC107718601,LOC107563248 other downstream 1042910 5957403 ~ 5962888 (+)

Expression


Co-expression Network