LOC122332129


Basic Information

Item Value
gene id LOC122332129
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 13050286 ~ 13050861 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_280
atcaaacataacataataattaaaaatacacccATATTGTGAGACAGCTTTTTAACAATGGGGTTGAAAAGCATTTGGCTGTTGATTATTGTAGTGATTTTAACTCAACAAGGTATCAGTGGTGATGAAATCCGGTTGGATCAGTCATCTGCTGAGATAAAGAAACTTGGAGAAACAGTGAAGATCTCCTGTAAAATATCTGGTTTTACAATGACAAGCTACTACATGCACTGGATACGACAGAAACCAGGGAAAGCTCTGGAGTGGATTGGGAGAGTTAACTCTGGCAGTAGTTCTAGCTCTAATTATCTTATTTATGCAGACTCCATGAAAAATCACTTCACTATGAGTGAGGATGTGTCTCAAAGTATTCAGTATCTTCAAGCTGAACGTCTGAGAGAAGAGGACTCTGCTGTATATTACTGTGCTCGACAGACACACTGACTCCATCTGATGAAGCAGCTCTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_280 True 469 V_gene_segment 0.49 2 13050286 13050861

Neighbor

gene id symbol gene type direction distance location
LOC122331939 NA coding downstream 57957 12987350 ~ 12992329 (-)
LOC122331923 NA coding downstream 63082 12981087 ~ 12987204 (-)
LOC122332086 gtf2f1,LOC107737737 coding downstream 70193 12974708 ~ 12980093 (-)
LOC122329559 LOC107582973,LOC107723206,LOC107554143,LOC107695115,LOC107689629,LOC107737739,LOC796777,LOC108436680 coding downstream 388438 12571028 ~ 12661848 (-)
sgsm3 sgsm3,LOC107737740,LOC107695086,LOC107758493,LOC107689630 coding downstream 505805 12530109 ~ 12544481 (-)
LOC122332149 NA coding upstream 32348 13083209 ~ 13083734 (-)
LOC122341303 NA coding upstream 33165 13084026 ~ 13084966 (-)
LOC122332140 ighm,ighv5-5,ighv5-4,ighv5-8 coding upstream 35514 13086375 ~ 13087267 (-)
LOC122341304 LOC107710248 coding upstream 41349 13092210 ~ 13092846 (-)
LOC122341774 NA coding upstream 46268 13097129 ~ 13100644 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding downstream 147376 12900781 ~ 12902910 (-)
G19677 LOC107737766 non-coding downstream 163332 12864310 ~ 12886954 (-)
LOC122332655 NA non-coding downstream 754863 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 779350 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 819907 12226575 ~ 12230379 (-)
LOC122332187 NA non-coding upstream 21699 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 29209 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 39810 13090671 ~ 13091152 (-)
G19726 NA non-coding upstream 74660 13125521 ~ 13129608 (-)
G19811 NA non-coding upstream 306718 13357579 ~ 13357789 (-)
G19700 NA other downstream 2792 13047041 ~ 13047494 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 287196 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 370486 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 706414 12339187 ~ 12343872 (-)
LOC122341756 NA other downstream 1129519 11909775 ~ 11920767 (-)
gng13b NA other upstream 735148 13786009 ~ 13792602 (-)
G19933 NA other upstream 754507 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 1152069 14202930 ~ 14204350 (-)
mlx mlx,LOC107601295,LOC107721525,LOC107720011,LOC107590371,LOC107688133,LOC107654516 other upstream 1384286 14435147 ~ 14439541 (-)
plcd3a plcd3,plcd3a,LOC107591554,LOC107581738,LOC107738025,LOC107654535,LOC107674588,LOC108432051,LOC106607244 other upstream 2069945 15120806 ~ 15179359 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026546 ighv2-1 coding NC_007114.7 CM002887.2 34061400 ~ 34061892 (-)
grasscarp (Ctenopharyngodon idella) G224786 NA non-coding CI01000052 null 3150867 ~ 3160167 (-)
striped catfish (Pangasianodon hypophthalmus) G215199 NA unknown NC_047607.1 CM018553.1 21777709 ~ 21778452 (-)